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Mammalian PromoterCAD template files for adding regulatory motif data

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These template files are useful if you would like to add new data to PromoterCAD, such as for a new organisms, experimental measurements, or motif identification methods.

Tutorial Page:
Advanced Tutorial 2B: add a new motif database to PromoterCAD
Mammalian PromoterCAD:
http://promotercad.org/mammal
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://promotercad.org
#license http://creativecommons.org/licenses/by/3.0/deed.en
#file_name MammalianPromoterCAD_GeneAtlas_Eye_Template
#download_from http://linkdata.org/work/rdf1s1067i
#namespace Gene http://www.ncbi.nlm.nih.gov/gene/
#property motif motif name motif sequence motif position Probe ID label:ciliary_bodies label:cornea label:eyecup label:iris label:lens label:retina label:retinal_pigment_epithelium
#object_type_xsd string string string float string float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
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Gene:11972 1415671_at 955.1659 1456.66879 641.08275 1615.12039 1031.46106 1905.19261 2112.03085
Gene:57437 1415672_at 2087.97211 3140.03858 1584.71868 2548.95465 2207.68042 1938.96152 2424.75167
Gene:100678 1415673_at 65.03796 110.50702 32.00235 120.57247 126.26975 174.77317 218.58386
Gene:60409 1415674_a_at 150.85287 269.34281 36.17024 242.43646 709.52335 235.23928 318.34447
Gene:13481 1415675_at 112.18134 190.95165 112.6357 181.02053 275.7078 120.60382 160.04524
Gene:19173 1415676_a_at 912.88713 2233.40675 685.23825 1334.58587 2573.18255 1629.63876 2230.73592
Gene:52585 1415677_at 4229.69674 446.74538 211.06727 3175.86115 269.34633 176.51857 582.24519
Gene:19042 1415678_at 1047.55286 2296.19013 960.53249 1492.6997 2058.09606 1776.98078 1626.33044
Gene:66340 1415679_at 1596.13669 3334.3782 1708.53204 2201.18677 5738.19604 1355.53928 2085.73398
Gene:17222 1415680_at 323.99854 548.2889 255.45382 408.60624 307.65291 219.88981 409.29821
Gene:94067 1415681_at 80.61572 350.78027 66.63294 127.82429 322.83433 97.89178 221.84979
Gene:65246 1415682_at 89.4025 146.95993 35.07173 130.71049 108.04872 120.2052 115.29184
Gene:18107 1415683_at 1106.5195 1733.12272 1158.90993 1271.37751 4316.64143 909.02276 1373.95894
Gene:11793 1415684_at 73.24756 266.69195 20.03987 73.28675 74.60204 113.19962 143.48396
Gene:76784 1415685_at 179.33542 141.84935 142.47215 183.10093 93.33668 325.18273 320.61858
Gene:68365 1415686_at 911.29315 1000.99137 384.14648 829.18811 614.53276 1146.84607 898.54084
Gene:19156 1415687_a_at 3197.68378 1259.85662 1362.68201 4712.34277 1573.42467 2291.64493 11317.89695
Gene:67128 1415688_at 521.93608 1152.2757 643.57046 760.97106 687.95659 799.88463 956.58846
Gene:72739 1415689_s_at 428.9793 274.3225 154.73799 470.42611 168.53279 422.19509 525.02895
Gene:94064 1415690_at 331.51119 388.10948 51.41165 695.8772 369.71404 407.08669 777.89283
Gene:13383 1415691_at 2295.20562 1744.90187 1626.38249 1970.65026 2663.52681 2243.87397 2246.94379
Gene:12330 1415692_s_at 5226.50079 2878.16038 3237.77994 5229.10617 3510.32548 4528.72086 4804.12524
Gene:67819 1415693_at 152.88965 147.22092 62.47966 197.77095 118.01433 83.2036 157.73603
Gene:22375 1415694_at 20.45164 16.56267 8.33142 28.83281 8.84337 55.38654 46.15844
Gene:26440 1415695_at 790.41882 1298.70702 244.2335 1217.39388 1143.39285 920.98593 1432.58529
Gene:20224 1415696_at 1186.79434 1088.25269 999.59624 1214.16856 1492.79591 1415.12561 1511.36408
Gene:23881 1415697_at 228.53106 804.57274 164.83494 321.80842 355.28919 160.80469 375.42952
Gene:105348 1415698_at 109.94899 18.50997 120.05819 140.67982 22.64355 27.00573 39.58559
Gene:209318 1415699_a_at 953.95845 880.36686 480.58454 1435.07515 3467.53838 1131.7805 1299.0462
Gene:67437 1415700_a_at 1358.28719 1294.65951 644.40926 1896.94436 4270.80705 1121.29696 1135.45978
Gene:65019 1415701_x_at 4729.09916 18334.83358 6809.03613 7781.48419 38523.19944 3120.9874 5361.31611
Gene:13016 1415702_a_at 693.75118 803.72461 847.70086 907.97251 554.10049 1260.11813 1242.8274
Gene:59026 1415703_at 375.44614 574.35901 171.94857 292.959 215.80161 173.56729 316.70069
Gene:321022 1415704_a_at 735.26578 1161.86293 127.59099 839.46367 1671.5383 339.94524 1600.30907
Gene:66818 1415705_at 330.13387 577.42754 105.45125 368.19955 650.9345 343.18193 555.55851
Gene:12847 1415706_at 1679.19625 1549.78994 660.17614 1383.31427 2313.98852 1534.35694 1463.35919
Gene:99152 1415707_at 317.74795 842.83509 281.91599 504.26468 1130.34347 336.87582 381.77444
Gene:544752 1415708_at 694.53159 518.01574 247.77222 766.03278 1214.70171 856.22035 763.23251
Gene:107338 1415709_s_at 107.81907 137.68551 95.01026 117.72341 340.91747 127.76392 165.20785
Gene:231430 1415710_at 96.97976 90.04893 58.46144 80.65792 127.75527 103.63092 107.51964
Gene:211673 1415711_at 542.76192 790.70736 246.0166 625.94266 701.07341 998.11593 1361.8665
Gene:360216 1415712_at 240.37764 334.04603 378.75857 279.60189 233.33976 795.83359 500.31844
Gene:27225 1415713_a_at 185.65698 125.18841 15.60992 212.40818 236.14442 152.78962 262.16141
Gene:66618 1415714_a_at 115.6762 208.67443 114.2105 169.32499 212.23559 124.03947 191.6319
Gene:68366 1415715_at 80.26809 81.18057 34.1587 187.93683 178.07814 132.15271 204.36795
Gene:100043813 1415716_a_at 5378.45758 20191.10989 19277.16699 11346.23697 32781.03755 3643.89502 5707.64919
Gene:57294 1415716_a_at 5378.45758 20191.10989 19277.16699 11346.23697 32781.03755 3643.89502 5707.64919
Gene:66743 1415717_at 183.38517 232.02293 141.93161 224.54062 214.17076 483.97628 202.85058
Gene:50724 1415718_at 174.87328 326.90096 131.60976 277.07699 611.92868 206.64207 402.63793
Gene:74252 1415719_s_at 234.64588 98.2718 125.6016 323.18504 304.58557 444.37799 305.97988
Gene:66591 1415720_s_at 30.28062 101.7243 30.81499 40.05552 38.40748 41.37934 54.69125
Gene:74763 1415721_a_at 118.55381 232.49883 59.58251 145.7336 82.77785 153.64088 292.83737
Gene:66201 1415722_a_at 239.40624 377.33649 148.61729 299.2942 285.48995 370.35032 470.20315
Gene:217869 1415723_at 2494.36786 1564.67894 2089.13327 2440.57293 4533.5041 2572.62005 2557.56119
Gene:12540 1415724_a_at 1758.50801 2367.92421 936.43905 1660.54148 1014.24569 693.53838 1741.5546
Gene:106298 1415725_at 180.60994 224.31518 45.8723 186.41088 438.426 335.25219 306.36959
Gene:81702 1415726_at 609.65314 562.39159 358.07779 477.15215 866.96866 657.16248 634.5292
Gene:246703 1415727_at 618.44583 1397.54825 302.22458 837.32966 1493.30397 621.53892 1076.55703
Gene:54196 1415728_at 91.99049 90.8447 261.52747 130.93782 62.47362 282.6436 328.06306
Gene:18607 1415729_at 388.64028 681.14575 600.86982 264.41518 791.02033 577.18714 437.42814
Gene:269061 1415730_at 866.85162 648.85012 626.50167 810.54997 1430.6098 1309.99323 906.2917
Gene:52477 1415731_at 52.49083 58.25731 62.42529 84.42636 46.0377 66.34909 60.09969
Gene:193742 1415732_at 199.10321 208.94962 210.63813 260.82869 170.04983 216.14994 164.92531
Gene:68512 1415733_a_at 149.26071 473.19182 215.24043 668.65004 171.34753 190.08624 456.21625
Gene:19349 1415734_at 3649.50015 2742.33529 2102.86853 4830.99124 3714.99705 2827.41659 6536.00341
Gene:13194 1415735_at 555.75285 492.92556 472.97889 518.03487 805.05907 858.60666 1364.67618
Gene:56612 1415736_at 224.45303 707.89496 190.43305 571.7781 2475.70698 276.57196 656.94585
Gene:54391 1415737_at 1098.70552 460.68528 638.12749 816.22066 680.12006 511.65985 808.91543
Gene:66073 1415738_at 74.13253 298.21423 41.41114 132.92988 995.19871 76.63774 97.27118
Gene:68035 1415739_at 376.5305 625.34326 502.09462 590.54978 721.2511 648.00742 700.06311
Gene:19184 1415740_at 337.00764 745.66892 184.77715 528.05494 4736.43068 863.49003 1082.72818
Gene:21982 1415741_at 1654.04912 1577.18315 917.38718 1840.83363 1834.2908 878.02399 979.33544
Gene:11993 1415742_at 111.2191 152.21267 74.21062 147.77938 103.19436 110.8413 113.05172
Gene:15184 1415743_at 131.8736 79.3351 107.96842 244.06268 52.67522 734.16028 350.71847
Gene:14976 1415744_at 382.60769 567.64911 321.72554 414.48879 810.47454 494.01505 761.47378
Gene:13185 1415745_a_at 512.4079 943.7981 297.60032 795.95059 352.56578 241.28531 668.01624
Gene:71722 1415746_at 203.69745 160.43772 226.52731 176.54525 140.73777 149.79147 174.71853
Gene:66878 1415747_s_at 953.27759 1253.55607 1272.89251 1040.29768 4179.14583 1579.66594 1267.37289
Gene:59288 1415748_a_at 33.27653 78.05515 20.76 59.76255 104.06014 86.84515 112.96755
Gene:54170 1415749_a_at 1401.32766 1030.72127 1327.84759 2020.27477 4793.31274 1250.95663 1755.33426
Gene:213773 1415750_at 27.65663 73.36058 23.89324 62.02012 55.65838 59.33283 48.16065
Gene:15441 1415751_at 1786.14065 2047.86908 1501.19973 1611.15288 1952.13388 1630.37744 1504.02456
Gene:407819 1415752_at 508.47157 562.1575 344.47226 950.64754 786.31939 798.7627 1686.63014
Gene:216169 1415753_at 155.53421 446.49024 74.50732 334.11422 719.68237 282.49129 370.12642
Gene:69833 1415754_at 448.09967 1555.51401 250.28256 823.72866 939.03623 445.74154 697.07239
Gene:66589 1415755_a_at 266.38466 432.93047 135.64636 406.98483 576.95568 502.67893 773.7746
Gene:20615 1415756_a_at 268.27587 207.67666 57.85334 359.80277 380.45116 154.12875 481.35534
Gene:107338 1415757_at 56.79653 36.91076 42.67744 51.24987 84.46407 61.50598 76.76823
* Row count is limited to 100.