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Mammalian PromoterCAD template files for adding regulatory motif data

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These template files are useful if you would like to add new data to PromoterCAD, such as for a new organisms, experimental measurements, or motif identification methods.

Tutorial Page:
Advanced Tutorial 2B: add a new motif database to PromoterCAD
Mammalian PromoterCAD:
http://promotercad.org/mammal
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://promotercad.org
#license http://creativecommons.org/licenses/by/3.0/deed.en
#file_name MammalianPromoterCAD_GeneAtlas_Lymphocytes_Template
#download_from http://linkdata.org/work/rdf1s1067i
#namespace Gene http://www.ncbi.nlm.nih.gov/gene/
#property motif motif name motif sequence motif position Probe ID label:B-cells_GL7_negative_KLH label:B-cells_GL7_positive_Alum label:B-cells_GL7_positive_KLH label:B-cells_GL7negative_Alum label:B-cells_marginal_zone label:Baf3 label:NK_cells label:T-cells_CD4+ label:T-cells_CD8+ label:T-cells_foxP3+ label:follicular_B-cells label:thymocyte_DP_CD4+CD8+ label:thymocyte_SP_CD4+ label:thymocyte_SP_CD8+
#object_type_xsd string string string float string float float float float float float float float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
Gene:54161 1415670_at 511.18213 530.52141 382.14243 555.36111 433.57185 1891.55688 617.12447 824.13072 819.03398 576.59694 1308.82286 558.05293 515.20788 677.19297
Gene:11972 1415671_at 1244.05432 1526.34908 1317.38512 1323.11809 886.67926 1757.73225 757.43594 851.59946 845.26316 691.60908 1851.89782 1006.52083 1158.19411 1108.14192
Gene:57437 1415672_at 2485.43898 2717.0515 2501.42776 2998.41613 2086.89705 3882.6019 5085.96122 2337.05685 2418.6672 2230.09113 3693.02052 4131.94119 3148.47284 3189.04712
Gene:100678 1415673_at 110.00214 121.55275 108.50516 116.99491 139.53607 287.12323 391.17485 310.37713 415.73494 300.75482 324.03054 434.27522 272.27705 431.34694
Gene:60409 1415674_a_at 226.91634 247.3914 268.16514 244.21248 255.27457 1247.40443 365.97984 465.39949 529.0428 525.99412 1024.026 258.02018 301.61725 327.28762
Gene:13481 1415675_at 252.44138 345.71838 329.60176 281.60264 199.33205 541.46958 354.09709 366.74554 394.3605 363.4723 578.37333 311.32073 203.97446 290.92617
Gene:19173 1415676_a_at 1017.54929 1289.03192 1068.46667 1096.75529 1125.11884 3664.61494 1266.28756 2523.78765 2550.63966 2360.28052 1870.05694 3271.71647 2183.04907 3273.0358
Gene:52585 1415677_at 194.92877 319.1072 268.65808 224.69161 104.53863 405.14271 305.33951 264.45562 204.40912 218.26221 253.94442 519.11658 210.13637 248.3952
Gene:19042 1415678_at 1072.61271 1160.67056 1145.60015 1206.41511 641.48013 910.76202 2084.87685 1357.79105 1228.05135 1435.57932 682.58159 695.86933 761.99123 806.76321
Gene:66340 1415679_at 2164.19398 2303.48831 1968.68979 2160.48088 1938.93405 3716.11691 2229.42683 3520.40231 2814.59568 3890.01908 6050.7032 2798.33008 2965.44673 2463.69515
Gene:17222 1415680_at 679.81573 787.8236 745.23361 832.32122 864.74064 2029.36469 1707.08941 1177.85656 1029.31814 1257.75804 627.46187 760.08888 602.11593 685.40282
Gene:94067 1415681_at 193.94918 347.71317 420.56686 213.50835 236.30541 1363.32054 791.82299 252.82354 295.96167 313.85099 1274.1498 333.72299 270.9658 298.09492
Gene:65246 1415682_at 200.55905 156.89903 128.21874 166.31494 60.8875 521.89977 99.87312 169.59603 214.28908 126.46007 218.15905 137.38055 91.26856 148.0132
Gene:18107 1415683_at 1211.10429 1458.03909 1616.01025 1131.10545 1718.65817 3202.86045 2082.82725 2260.82689 2217.85075 2329.08829 1977.74294 1823.96866 1591.12858 2050.97131
Gene:11793 1415684_at 165.59334 165.93295 134.9299 223.76675 106.98657 363.93193 480.62028 211.05583 263.54742 193.46428 334.2893 97.8194 108.67621 142.12915
Gene:76784 1415685_at 289.37774 364.45833 352.32971 328.64841 394.65022 612.48847 401.63942 441.16106 444.58756 443.82042 556.58793 358.05037 380.06789 432.89632
Gene:68365 1415686_at 616.89154 665.96327 519.25549 684.93765 447.69981 1151.18078 1184.37081 623.9024 500.89777 660.42546 680.03624 541.42643 424.20176 490.89377
Gene:19156 1415687_a_at 3086.34716 4573.29984 2853.0805 4805.81658 3557.49909 2316.02978 2164.24986 1694.4962 2054.97518 2013.94736 6550.5562 3435.09665 1449.76606 2387.60711
Gene:67128 1415688_at 640.68393 773.48743 594.58843 874.76839 616.54862 1692.29613 2134.90645 1201.45844 1046.28871 1249.42402 1058.29119 1055.78886 806.91199 885.32757
Gene:72739 1415689_s_at 754.22489 797.10572 792.0988 957.76154 741.80013 430.27822 793.63389 564.32397 592.92484 640.11661 632.31364 665.07074 753.52795 808.46814
Gene:94064 1415690_at 118.85456 189.5278 199.03808 117.1036 113.52258 2478.19239 372.40456 374.58588 386.8874 412.80785 743.31929 614.0785 444.75571 527.725
Gene:13383 1415691_at 1087.26352 1137.84984 1080.68681 1246.13568 992.97345 822.82198 1599.9501 1067.92491 1002.85409 1256.31278 943.15421 1102.74823 1013.27595 926.76552
Gene:12330 1415692_s_at 5806.40121 5577.09992 4915.31553 6476.5663 4543.84622 9064.16635 6881.96096 4509.61988 4743.11565 4980.25082 6707.27002 4810.51137 4016.85924 5962.30564
Gene:67819 1415693_at 352.5897 303.98854 188.64566 412.41477 154.86946 304.91841 226.39397 235.1971 235.76775 166.27945 290.4947 519.79166 258.56454 334.59847
Gene:22375 1415694_at 101.12146 113.42894 70.72003 114.19918 28.93496 79.2209 49.23186 93.45889 115.82755 48.71043 161.28804 37.19356 36.67623 60.3156
Gene:26440 1415695_at 2765.27664 2724.20048 2443.66616 3079.34561 1535.29431 8739.76951 4982.00459 3153.74555 3061.35351 3126.36862 6745.6808 5350.8471 3829.79641 5453.38092
Gene:20224 1415696_at 1189.95967 1050.34674 820.94237 1312.48033 512.51439 906.86106 907.1602 1129.765 1099.14453 841.15138 613.25075 1396.81436 867.88207 1175.6646
Gene:23881 1415697_at 539.20039 528.76841 505.89428 609.61654 507.45806 462.26889 976.52581 1037.69254 911.71398 1091.89981 486.05354 572.46498 580.00465 726.16948
Gene:105348 1415698_at 115.32475 87.92967 74.57072 98.25016 105.05427 1504.79186 1803.84242 254.76471 615.18683 205.4218 184.06368 5.22521 38.94826 138.21152
Gene:209318 1415699_a_at 603.70048 603.91955 732.93927 585.53784 944.7134 1010.27477 2497.12255 1214.28934 1116.94017 1594.16967 1189.95737 726.00504 637.70682 817.19363
Gene:67437 1415700_a_at 1410.77344 1535.48003 1023.40981 1874.39298 1067.23406 5719.3365 2262.30501 1778.65925 1496.65552 1880.87227 1381.05599 1876.52671 1230.31598 1608.68741
Gene:65019 1415701_x_at 17491.13423 19068.06499 17151.62995 18539.14247 17702.78382 43954.97823 30929.0436 31439.96996 31350.65234 30612.74327 49858.31814 18377.09381 21982.61348 27162.9776
Gene:13016 1415702_a_at 2416.21926 2700.62247 2133.70363 2565.88205 1361.74255 1409.32308 1688.32744 2456.792 2202.56381 1758.71537 3082.11318 2223.39398 2066.8764 2081.34335
Gene:59026 1415703_at 814.10439 665.55355 691.87714 783.39322 816.17015 1387.79588 581.41697 636.17782 643.13521 813.52754 1799.2084 433.66133 505.21074 625.43868
Gene:321022 1415704_a_at 897.25601 1182.5117 1191.19855 949.45043 593.62464 3798.00361 1242.35873 727.65544 802.92187 846.53228 2836.25627 2853.50132 934.57752 2181.70463
Gene:66818 1415705_at 262.58378 272.93174 254.33784 323.23813 141.90013 301.8144 195.43576 417.80842 396.67068 283.92683 251.68124 392.80145 264.61453 298.5876
Gene:12847 1415706_at 1721.25687 2102.67278 2420.38349 1954.94582 1438.8049 2837.00398 3148.21808 2113.47104 2133.94332 1993.73671 3529.96012 2290.01457 1728.87054 1982.97624
Gene:99152 1415707_at 458.42131 650.8613 557.48273 509.72532 385.40743 403.21757 554.90124 575.08818 522.50206 592.48734 817.46526 522.04707 312.44108 430.89667
Gene:544752 1415708_at 1494.02169 1645.01145 1527.88509 1928.26112 1202.72681 2303.509 1921.36242 1129.38911 958.27413 1299.10539 3514.61105 1267.43039 920.54773 934.77143
Gene:107338 1415709_s_at 134.53333 187.13764 157.32038 136.02493 132.47116 335.74492 223.17958 140.7657 156.18623 122.90786 210.07458 67.86328 72.21163 94.31702
Gene:231430 1415710_at 348.40157 407.39738 400.06451 438.7189 223.50293 1698.4992 489.90073 412.62728 497.95405 293.07334 348.97445 234.89543 280.88973 398.40732
Gene:211673 1415711_at 782.58503 1000.91855 881.56339 987.74597 966.75375 1358.16145 2133.41791 1105.40514 964.43625 1235.7471 1735.43153 376.17538 752.02476 638.32293
Gene:360216 1415712_at 282.11491 261.35741 301.58982 257.27785 234.60422 231.87502 244.47181 241.11918 171.50961 203.97406 399.80214 102.23652 167.42638 115.25521
Gene:27225 1415713_a_at 174.49775 271.14768 350.38654 219.74438 249.21884 461.25836 252.67452 437.43949 446.22809 526.37401 674.9247 167.99985 270.93673 302.74997
Gene:66618 1415714_a_at 469.87223 222.83025 315.84528 205.81574 265.77094 1279.72367 258.27477 163.09811 180.0319 236.57064 1050.19453 291.88404 258.31314 196.18275
Gene:68366 1415715_at 132.10296 133.04948 120.30315 157.38489 104.71063 202.68101 228.5952 97.33882 91.64423 99.60901 167.16802 115.62703 68.61181 80.11207
Gene:100043813 1415716_a_at 41181.62365 33747.07677 26931.83418 37496.80057 38260.05631 40127.28785 54094.29046 45011.27842 46444.55891 42948.25792 73761.17264 8861.11982 16311.83865 18538.91785
Gene:57294 1415716_a_at 41181.62365 33747.07677 26931.83418 37496.80057 38260.05631 40127.28785 54094.29046 45011.27842 46444.55891 42948.25792 73761.17264 8861.11982 16311.83865 18538.91785
Gene:66743 1415717_at 476.62168 451.39895 247.98662 492.85791 286.75081 386.11721 202.1321 506.77378 501.38483 225.23695 554.25474 437.2963 239.67088 420.51794
Gene:50724 1415718_at 119.95241 189.47922 285.1434 108.65901 162.51009 400.43715 725.59875 279.86719 296.09311 360.31552 446.81611 195.13168 188.5149 203.05671
Gene:74252 1415719_s_at 266.92457 257.87177 218.71384 303.80219 191.47896 349.38935 469.07951 302.93969 352.33666 296.84139 319.20259 388.44599 340.3757 406.98152
Gene:66591 1415720_s_at 140.72788 202.49741 183.63743 172.84489 75.55287 180.67443 121.93064 292.67623 265.33519 227.12422 243.36684 352.82521 236.21211 267.85225
Gene:74763 1415721_a_at 263.17311 365.41535 365.74957 287.02346 175.39499 204.93118 269.70611 336.30405 296.52657 267.4822 570.12347 115.75781 173.03312 183.2828
Gene:66201 1415722_a_at 693.58221 675.95347 691.49889 764.18528 448.31483 918.16488 741.75503 748.9905 781.23063 631.36833 555.20505 1098.55397 605.68111 734.17788
Gene:217869 1415723_at 3424.09248 3489.60905 3666.21363 4060.22303 2872.29504 1461.68054 4776.4424 3721.52506 3704.02849 3452.41909 3738.10164 2526.71881 2979.73392 3476.83324
Gene:12540 1415724_a_at 5450.07348 4928.06926 3278.65454 5996.15741 2412.78318 3536.98437 5831.89987 6099.62862 5826.37302 3757.72004 8349.93389 3176.35062 3645.29845 4852.26562
Gene:106298 1415725_at 356.7829 305.5229 223.8685 381.42977 212.69762 365.13803 480.57181 345.3095 286.34978 349.91991 267.37711 308.8214 246.14072 291.8283
Gene:81702 1415726_at 575.58608 583.05667 698.91326 531.57166 507.34929 1184.55934 1263.84157 583.41538 538.4673 755.20161 850.39205 375.83331 467.93638 491.32297
Gene:246703 1415727_at 601.86508 573.09322 466.82245 585.73939 394.62757 1849.04641 859.44162 592.44671 541.62597 667.16305 708.29701 867.15231 772.02342 751.99167
Gene:54196 1415728_at 255.46024 277.60488 108.79868 390.08173 86.35375 386.87536 22.04726 127.36719 135.93291 73.9174 251.82284 470.50125 486.02366 598.40646
Gene:18607 1415729_at 316.71013 359.50564 298.49161 352.99991 421.75771 760.41744 1261.49093 594.99685 568.33422 537.61378 653.18227 557.13619 475.19802 482.91028
Gene:269061 1415730_at 1018.92848 1341.47673 1298.58828 1270.88925 1607.00559 1215.82652 2211.01308 1146.12905 962.48975 1586.3909 1898.91376 1492.08275 979.00736 729.83267
Gene:52477 1415731_at 139.01697 162.15127 185.80879 151.23882 81.32506 106.94653 80.2548 93.98316 76.95281 129.39862 275.02138 58.25731 52.02713 64.79001
Gene:193742 1415732_at 168.45826 211.80133 173.72641 209.46697 130.98665 209.86086 218.48723 199.10321 245.80135 123.0246 192.12459 209.86086 139.653 162.68219
Gene:68512 1415733_a_at 461.5103 477.50272 486.62934 383.42913 502.97755 3583.30558 765.75615 720.3069 928.32017 893.38411 1088.4731 695.40846 580.53366 922.74235
Gene:19349 1415734_at 2262.53088 2453.00755 2209.64565 2225.0647 1802.21943 2912.01622 1771.90239 3034.71396 3089.38319 2677.14853 3175.63572 2160.30866 1489.34081 2006.79458
Gene:13194 1415735_at 461.38994 505.48507 573.27096 485.10169 472.97889 3373.92124 366.38651 548.97406 624.35061 594.6647 824.23813 900.66513 472.97889 736.2003
Gene:56612 1415736_at 815.22635 869.37994 656.78947 880.95652 620.94773 5142.14042 377.31565 1107.86087 1304.94972 1079.3999 10431.00192 829.38297 952.97515 934.26452
Gene:54391 1415737_at 1184.53998 1025.88695 714.36313 1338.60737 707.08412 757.54841 878.97618 635.4636 477.07604 910.23093 1150.01257 475.48072 468.93088 481.37795
Gene:66073 1415738_at 134.6475 112.32613 164.43408 105.10867 82.74213 1166.21802 48.5793 192.22843 232.32877 207.56004 369.59727 204.23536 210.02831 254.22055
Gene:68035 1415739_at 653.80379 745.08943 664.32534 615.94945 588.8411 714.63642 1501.5676 1179.90534 1248.67652 1076.99921 1567.14854 762.73725 692.46655 719.62408
Gene:19184 1415740_at 561.81608 709.46653 551.18366 543.2163 324.01466 1668.09671 333.14595 935.24878 862.08427 659.94842 1777.32145 741.6232 665.47656 933.29134
Gene:21982 1415741_at 920.0632 886.38472 786.72538 879.60995 1147.06717 2939.42219 1918.94803 1706.55713 1600.07945 1953.06253 1300.74506 1145.77248 1032.30924 1029.65538
Gene:11993 1415742_at 294.75709 416.8705 413.81272 311.20409 233.91082 1132.73522 125.36582 365.45188 475.39826 315.43755 961.13979 253.7935 272.8226 335.18419
Gene:15184 1415743_at 125.54894 181.03939 121.80423 126.98957 94.92717 121.3183 135.02261 167.44765 168.25952 66.40332 157.85193 68.44394 112.40927 79.95344
Gene:14976 1415744_at 656.63743 896.74372 664.61543 626.51682 493.75368 2081.1214 444.87134 1163.05273 1362.91655 840.95717 1291.17535 1575.28783 1414.64479 2093.1426
Gene:13185 1415745_a_at 529.73356 556.71908 597.25241 535.57454 590.69187 438.47252 1084.661 1081.73976 918.73854 1115.34046 406.71692 566.80307 628.88346 698.64921
Gene:71722 1415746_at 238.78105 359.6572 402.10932 233.30125 196.89509 79.06929 207.36841 279.15999 268.00343 197.93783 393.79963 159.65017 235.87253 228.69004
Gene:66878 1415747_s_at 1145.0134 1218.92678 1444.72173 1179.88753 1216.51671 2246.64542 2208.61566 1640.12626 1335.42318 1703.50557 1200.8513 1131.55572 1203.96191 1090.46727
Gene:59288 1415748_a_at 212.46348 239.01704 171.52589 249.10961 138.99125 933.30269 130.02672 245.6801 254.77604 193.09532 858.7186 385.25284 257.40059 342.50566
Gene:54170 1415749_a_at 1141.97647 1256.7143 1046.16336 1342.05145 857.45753 942.79375 1640.50942 1307.8655 1301.9865 1278.36867 899.51546 1166.39599 1178.9253 1203.36747
Gene:213773 1415750_at 100.71209 155.68838 109.05103 96.52703 72.7199 267.74159 36.69884 156.21607 214.68572 144.88612 197.90192 98.09527 93.34464 125.95881
Gene:15441 1415751_at 889.31665 1199.9115 1264.82247 1182.48621 1021.27495 1647.36967 3014.34783 2972.49737 2506.53248 2627.2606 1801.07167 2668.0714 2685.64857 2909.9729
Gene:407819 1415752_at 1121.57189 1209.29582 987.93158 1146.81636 537.1013 904.80505 916.81393 1152.83133 1211.22622 768.22726 1604.95342 1240.33901 985.85432 1103.95437
Gene:216169 1415753_at 496.3161 849.62672 1223.97976 543.49545 583.84389 586.02685 485.31363 807.44 805.93072 490.16767 2550.25215 474.7692 430.26382 383.03357
Gene:69833 1415754_at 359.35973 394.62797 410.09889 304.16254 367.28774 1174.39614 378.52972 677.61359 903.29648 780.32622 1170.58113 566.45077 662.95648 1053.66452
Gene:66589 1415755_a_at 520.32599 730.0031 516.94028 629.60559 362.51007 883.00638 650.08311 1038.33673 955.47344 647.05124 1096.3791 885.62915 556.40214 669.90263
Gene:20615 1415756_a_at 425.56598 526.18726 396.75467 540.27393 292.42239 551.87421 741.7199 298.54462 331.46376 350.95626 639.68324 118.02235 178.15062 150.99131
Gene:107338 1415757_at 72.11735 94.2253 90.94483 72.77157 61.50598 452.33856 56.21707 64.48007 62.40492 59.29151 270.67725 38.32492 47.32112 57.21275
* Row count is limited to 100.