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Mammalian PromoterCAD template files for adding regulatory motif data

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These template files are useful if you would like to add new data to PromoterCAD, such as for a new organisms, experimental measurements, or motif identification methods.

Tutorial Page:
Advanced Tutorial 2B: add a new motif database to PromoterCAD
Mammalian PromoterCAD:
http://promotercad.org/mammal
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://promotercad.org
#license http://creativecommons.org/licenses/by/3.0/deed.en
#file_name MammalianPromoterCAD_GeneAtlas_Osteoblasts_Osteoclasts_Template
#download_from http://linkdata.org/work/rdf1s1067i
#namespace Gene http://www.ncbi.nlm.nih.gov/gene/
#property motif motif name motif sequence motif position Probe ID label:osteoblast_day5 label:osteoblast_day14 label:osteoblast_day21 label:osteoclasts
#object_type_xsd string string string float string float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
Gene:54161 1415670_at 5259.1535 4059.15978 3326.12227 1135.94638
Gene:11972 1415671_at 4348.44903 3724.98468 3707.14521 7639.07663
Gene:57437 1415672_at 4492.54635 4862.18946 4729.29803 5165.56224
Gene:100678 1415673_at 1520.17287 410.63761 376.12002 1094.72411
Gene:60409 1415674_a_at 1950.40397 1269.34928 1010.96945 1056.4815
Gene:13481 1415675_at 654.528 594.8389 534.37457 628.61184
Gene:19173 1415676_a_at 3507.06764 2964.89442 2708.66072 4142.37864
Gene:52585 1415677_at 680.63357 1165.49216 1405.72657 1183.93056
Gene:19042 1415678_at 1279.9173 1113.49154 1120.07048 899.67862
Gene:66340 1415679_at 2545.62035 3260.09334 3970.4372 3958.42812
Gene:17222 1415680_at 767.57239 481.56466 442.34319 755.91083
Gene:94067 1415681_at 914.10504 812.85342 766.87616 1083.15335
Gene:65246 1415682_at 392.78954 226.59008 207.56612 276.27918
Gene:18107 1415683_at 2724.5996 1917.31209 1714.49266 3505.45912
Gene:11793 1415684_at 427.98564 323.11014 333.66934 766.09282
Gene:76784 1415685_at 464.58428 365.29532 382.80816 721.00421
Gene:68365 1415686_at 873.01664 716.725 839.7648 1782.88092
Gene:19156 1415687_a_at 8291.72889 8830.55119 15179.3098 42478.75627
Gene:67128 1415688_at 1309.89671 1189.53034 1187.15493 1205.59414
Gene:72739 1415689_s_at 409.54919 388.65846 443.50076 168.23673
Gene:94064 1415690_at 2457.49586 2889.98851 2793.92048 3468.32214
Gene:13383 1415691_at 1446.16969 1257.12343 1087.32554 430.70129
Gene:12330 1415692_s_at 10767.94736 7600.2812 7896.91574 10495.30424
Gene:67819 1415693_at 518.02505 505.42097 510.32985 572.28429
Gene:22375 1415694_at 230.33585 138.34348 90.04975 317.23686
Gene:26440 1415695_at 5428.97603 5341.17137 5199.16077 9794.84112
Gene:20224 1415696_at 2480.02689 3738.61169 3471.43602 923.05158
Gene:23881 1415697_at 814.11135 687.534 577.02742 1085.52616
Gene:105348 1415698_at 604.42202 564.93243 366.341 536.73597
Gene:209318 1415699_a_at 1590.33217 1344.96257 1300.02219 1099.49963
Gene:67437 1415700_a_at 9364.21191 8698.27907 7542.23656 5129.97935
Gene:65019 1415701_x_at 48389.98384 36645.65761 38146.35663 45387.49094
Gene:13016 1415702_a_at 2087.41262 2138.98432 1989.15564 2254.08994
Gene:59026 1415703_at 404.37546 290.95666 306.60266 681.27902
Gene:321022 1415704_a_at 4380.39089 2094.78448 2078.95568 2333.85893
Gene:66818 1415705_at 883.40132 928.8932 908.14354 546.22805
Gene:12847 1415706_at 6525.29746 6658.22505 6693.10295 3553.11388
Gene:99152 1415707_at 1373.62492 1934.62234 1841.88178 1221.60548
Gene:544752 1415708_at 1590.77822 1470.52515 1346.18056 719.84703
Gene:107338 1415709_s_at 209.65944 192.29001 175.85096 162.59959
Gene:231430 1415710_at 777.94176 617.36321 413.47867 553.604
Gene:211673 1415711_at 473.10354 410.46288 442.23401 761.85422
Gene:360216 1415712_at 169.15093 141.91407 157.91134 148.56595
Gene:27225 1415713_a_at 519.03676 468.07462 351.70756 562.04222
Gene:66618 1415714_a_at 1448.49265 1128.96643 1137.06427 1392.47801
Gene:68366 1415715_at 292.95863 264.50145 208.47606 199.66543
Gene:100043813 1415716_a_at 26459.11181 21904.3814 21418.6658 12754.26109
Gene:57294 1415716_a_at 26459.11181 21904.3814 21418.6658 12754.26109
Gene:66743 1415717_at 154.24469 175.62545 182.46953 385.59831
Gene:50724 1415718_at 475.43684 536.08892 464.50359 288.51536
Gene:74252 1415719_s_at 357.09538 300.62848 266.93166 444.76266
Gene:66591 1415720_s_at 180.76294 249.1541 180.24338 311.28641
Gene:74763 1415721_a_at 226.11595 293.78078 347.01556 407.39264
Gene:66201 1415722_a_at 914.06186 738.1248 608.7771 1095.9083
Gene:217869 1415723_at 2334.55401 1902.91165 1856.22425 2879.5182
Gene:12540 1415724_a_at 8786.29332 8738.84196 9474.64041 11788.03411
Gene:106298 1415725_at 467.00326 312.00622 205.32801 312.0809
Gene:81702 1415726_at 744.28293 484.68939 491.27621 566.45678
Gene:246703 1415727_at 1824.76808 2110.21092 2081.36127 1559.70755
Gene:54196 1415728_at 171.9882 118.85392 75.62978 162.78025
Gene:18607 1415729_at 537.0773 364.64328 367.97006 716.30878
Gene:269061 1415730_at 506.27289 415.22315 386.90903 508.6681
Gene:52477 1415731_at 74.66294 94.12825 71.7377 129.45612
Gene:193742 1415732_at 221.19975 267.6495 280.04987 202.2789
Gene:68512 1415733_a_at 1543.71189 1160.69 1046.99088 1257.80508
Gene:19349 1415734_at 4432.05765 3925.04595 4547.00551 8823.46101
Gene:13194 1415735_at 3955.30912 2660.28626 2388.71342 1471.57651
Gene:56612 1415736_at 4589.40602 5370.85177 6189.47876 4025.18405
Gene:54391 1415737_at 768.08489 928.32805 1206.71719 732.23563
Gene:66073 1415738_at 1289.14507 1645.51382 1725.61768 833.66255
Gene:68035 1415739_at 797.54851 895.41959 751.76479 824.62182
Gene:19184 1415740_at 3064.17966 2766.8261 2339.55636 2513.536
Gene:21982 1415741_at 2922.06553 3527.88511 3484.96078 1798.44167
Gene:11993 1415742_at 400.58229 313.56188 331.80045 1063.86456
Gene:15184 1415743_at 103.73306 100.62598 124.55077 111.49468
Gene:14976 1415744_at 1092.65526 975.75758 695.33291 1465.25222
Gene:13185 1415745_a_at 1006.18169 630.38355 644.40661 1113.70182
Gene:71722 1415746_at 212.52201 162.17493 153.62412 346.53608
Gene:66878 1415747_s_at 1783.00851 1407.24776 1528.56303 2952.80228
Gene:59288 1415748_a_at 880.33788 955.07241 980.23526 1052.94106
Gene:54170 1415749_a_at 2594.08883 2460.62602 2625.5299 7627.84699
Gene:213773 1415750_at 208.22087 120.26883 79.96003 225.56038
Gene:15441 1415751_at 1606.47672 1785.90223 2012.67712 1933.46285
Gene:407819 1415752_at 2461.72724 2032.26705 2075.60716 2647.26384
Gene:216169 1415753_at 1076.06179 931.2609 874.00648 732.83152
Gene:69833 1415754_at 1599.82501 1617.09202 1344.26162 1995.32568
Gene:66589 1415755_a_at 1220.81809 884.37773 733.14981 771.36263
Gene:20615 1415756_a_at 1095.77829 1410.43539 1346.62531 848.10572
Gene:107338 1415757_at 260.82008 193.28238 227.7139 126.72183
* Row count is limited to 100.