Contact

Link and Publish your data

to the Linked Open Data Community

Linkdata Work Information

Mammalian PromoterCAD template files for adding regulatory motif data

Open Smart Phone View

These template files are useful if you would like to add new data to PromoterCAD, such as for a new organisms, experimental measurements, or motif identification methods.

Tutorial Page:
Advanced Tutorial 2B: add a new motif database to PromoterCAD
Mammalian PromoterCAD:
http://promotercad.org/mammal
0

value

useful
0
Loading...



Select a file name to see the detais.
Show API List
   
#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://promotercad.org
#license http://creativecommons.org/licenses/by/3.0/deed.en
#file_name MammalianPromoterCAD_GeneAtlas_White_Brown_adipose_Template
#download_from http://linkdata.org/work/rdf1s1067i
#namespace Gene http://www.ncbi.nlm.nih.gov/gene/
#property motif motif name motif sequence motif position Probe ID label:adipose_brown label:adipose_white label:mammary_gland__lact label:mammary_gland_non-lactating
#object_type_xsd string string string float string float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
Gene:54161 1415670_at 1016.89742 1417.15328 1400.42028 999.55012
Gene:11972 1415671_at 2113.24502 2694.41126 1891.19434 1704.50655
Gene:57437 1415672_at 2644.94287 2850.53686 3872.00738 2628.69612
Gene:100678 1415673_at 845.18437 671.83437 304.68216 364.25494
Gene:60409 1415674_a_at 1427.99921 913.2259 736.7263 501.42052
Gene:13481 1415675_at 281.82508 489.76745 404.57107 174.63188
Gene:19173 1415676_a_at 3084.14726 3212.91733 2861.54597 3138.78385
Gene:52585 1415677_at 865.36963 833.0436 633.1127 399.47898
Gene:19042 1415678_at 3498.0509 1314.30803 903.43977 3372.93076
Gene:66340 1415679_at 3213.1613 4194.6416 4061.4185 3175.97158
Gene:17222 1415680_at 403.07727 472.66702 518.61052 289.39092
Gene:94067 1415681_at 1056.14026 879.40853 767.30636 717.58524
Gene:65246 1415682_at 193.73513 215.73292 200.203 280.14301
Gene:18107 1415683_at 2477.02871 1845.19953 2828.36681 1429.40281
Gene:11793 1415684_at 314.45595 274.58723 324.01989 360.79512
Gene:76784 1415685_at 1242.29696 265.57739 431.89446 615.64049
Gene:68365 1415686_at 1291.20511 928.42915 748.13003 1069.84935
Gene:19156 1415687_a_at 14524.07155 11194.3486 16162.65882 9670.24264
Gene:67128 1415688_at 1455.05143 1026.65784 1067.15556 2789.38804
Gene:72739 1415689_s_at 460.17245 453.78021 506.96455 480.98447
Gene:94064 1415690_at 5140.91355 3276.73529 2245.17709 2685.1721
Gene:13383 1415691_at 777.68307 991.88677 1290.95838 1073.81873
Gene:12330 1415692_s_at 4060.451 9331.03213 7703.96162 4156.77604
Gene:67819 1415693_at 972.69961 516.04587 365.34542 413.58795
Gene:22375 1415694_at 152.87268 1940.40781 52.0009 124.93108
Gene:26440 1415695_at 6658.90148 5512.01788 6568.70647 4943.15579
Gene:20224 1415696_at 1519.53026 1592.77421 1299.3998 1683.66547
Gene:23881 1415697_at 664.67535 759.47291 501.7436 584.33155
Gene:105348 1415698_at 128.43123 431.11095 194.17741 151.09111
Gene:209318 1415699_a_at 866.54367 1426.2246 1198.02521 961.83759
Gene:67437 1415700_a_at 3792.04343 8120.66223 5572.05554 5635.1479
Gene:65019 1415701_x_at 19823.11825 38371.2355 39878.53314 29279.49608
Gene:13016 1415702_a_at 2382.53392 1382.77835 1836.24357 3401.56699
Gene:59026 1415703_at 1259.37697 1298.79442 1285.31205 1599.19557
Gene:321022 1415704_a_at 2191.50942 1709.96985 1673.98397 4422.03356
Gene:66818 1415705_at 421.64317 560.68975 575.97219 360.50693
Gene:12847 1415706_at 2670.33075 4853.0931 4204.94613 3195.73753
Gene:99152 1415707_at 511.16035 833.97173 991.83872 546.95093
Gene:544752 1415708_at 1128.34457 1423.3153 2031.70014 1150.73337
Gene:107338 1415709_s_at 256.59885 171.16127 142.17547 275.41619
Gene:231430 1415710_at 691.32016 252.46398 240.93968 334.27074
Gene:211673 1415711_at 742.47262 1078.26873 938.58833 1396.7268
Gene:360216 1415712_at 470.00321 201.88393 255.82365 808.00879
Gene:27225 1415713_a_at 558.5109 455.55572 304.48414 442.15161
Gene:66618 1415714_a_at 1408.70716 781.60723 543.66548 1516.15453
Gene:68366 1415715_at 245.02514 113.99735 86.52286 81.91587
Gene:100043813 1415716_a_at 16060.36431 35001.84891 30665.55421 31596.04758
Gene:57294 1415716_a_at 16060.36431 35001.84891 30665.55421 31596.04758
Gene:66743 1415717_at 118.94352 220.86144 180.07421 293.87746
Gene:50724 1415718_at 736.48053 238.65311 225.82816 617.40635
Gene:74252 1415719_s_at 414.92212 223.04235 211.94832 338.07617
Gene:66591 1415720_s_at 57.92974 111.59068 102.80431 131.90471
Gene:74763 1415721_a_at 490.41626 197.94253 168.29054 274.03143
Gene:66201 1415722_a_at 488.21464 682.18422 609.99377 403.93552
Gene:217869 1415723_at 2955.85978 2895.03093 2965.02406 2929.39538
Gene:12540 1415724_a_at 4714.38019 4387.63976 6019.13656 4165.16217
Gene:106298 1415725_at 273.83106 195.02142 200.1668 270.49365
Gene:81702 1415726_at 675.4514 789.7332 771.91485 887.5743
Gene:246703 1415727_at 2339.74798 1874.44018 1476.02638 1135.42729
Gene:54196 1415728_at 84.70256 452.90749 291.71811 280.35571
Gene:18607 1415729_at 375.59507 704.43867 640.18456 563.72437
Gene:269061 1415730_at 397.37123 533.39759 654.57519 569.13191
Gene:52477 1415731_at 121.49838 92.71739 65.68092 86.20271
Gene:193742 1415732_at 674.0373 403.42234 205.0865 525.34812
Gene:68512 1415733_a_at 2389.01201 879.41124 1394.00716 1238.41437
Gene:19349 1415734_at 3382.82191 3060.10692 2588.89944 3783.48588
Gene:13194 1415735_at 949.22787 1298.82164 1829.80607 1464.19207
Gene:56612 1415736_at 2929.98838 8553.64667 5267.64413 3980.27043
Gene:54391 1415737_at 1088.59151 1077.50062 1675.89894 1156.56809
Gene:66073 1415738_at 791.89575 588.01218 1257.74295 313.74483
Gene:68035 1415739_at 692.50427 695.79943 494.29109 761.25465
Gene:19184 1415740_at 1944.91883 1675.46652 1916.39407 2709.95975
Gene:21982 1415741_at 802.12834 1807.15133 3408.79981 896.18738
Gene:11993 1415742_at 572.78426 445.75773 488.05042 487.80009
Gene:15184 1415743_at 286.51469 121.34718 88.50139 205.12625
Gene:14976 1415744_at 1223.79834 1082.51774 1246.71988 1078.41092
Gene:13185 1415745_a_at 386.06925 549.25045 229.86694 242.03781
Gene:71722 1415746_at 87.69756 163.25217 116.71766 220.77177
Gene:66878 1415747_s_at 1537.91678 1503.08721 1974.97713 2256.44345
Gene:59288 1415748_a_at 668.41589 575.22635 578.86568 351.91205
Gene:54170 1415749_a_at 2701.98921 1543.2857 1154.08907 910.27252
Gene:213773 1415750_at 129.87581 66.53077 84.36543 98.02114
Gene:15441 1415751_at 1307.26318 1523.97775 1857.31681 1641.40757
Gene:407819 1415752_at 2889.62554 3113.30688 1681.48772 1246.46383
Gene:216169 1415753_at 1575.52074 932.45916 785.04768 1332.16041
Gene:69833 1415754_at 1539.1465 1269.32517 1295.06674 1149.5938
Gene:66589 1415755_a_at 833.38471 674.66879 506.25573 959.35037
Gene:20615 1415756_a_at 1194.09022 839.27272 594.68887 1517.89087
Gene:107338 1415757_at 406.92862 245.23331 176.40864 465.91032
* Row count is limited to 100.