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GenoCon2 Challenge A - Developmental Coexpression (AtGenExpress + ATTED-II promoter motif)

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Developmental Microarray Expression Data (AtGenExpress) of plant developmental tissues, combined with CEG coexpression analysis regulatory (7mer) motif calculations (ATTED-II). We took the median of triplicate measurements from AtGenExpress, then sorted the developmental series into plant tissues, with one category for seedlings (8 days old or less) and another for whole plants (older than 8 days).

References (for ATTED-II):
http://www.ncbi.nlm.nih.gov/pubmed/17130150
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101
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#LINK
#lang en
#attribution_name GenoCon_2
#attribution_url http://atted.jp/download.shtml
#license http://creativecommons.org/publicdomain/zero/1.0/deed.en
#file_name Leaf_GeneExp_v3_median
#download_from http://linkdata.org/work/rdf1s218i
#namespace ATTED http://atted.jp/data/locus/
#namespace Flowering http://linkdata.org/work/rdf1s220i/Flowering.html#
#namespace Fruit_Seeds http://linkdata.org/work/rdf1s220i/Fruit_Seeds.html#
#namespace HeptamerElement http://linkdata.org/work/rdf1s218i/Heptamer_elements.html#
#namespace Leaf http://linkdata.org/work/rdf1s220i/Leaf.html#
#namespace Root http://linkdata.org/work/rdf1s220i/Root.html#
#namespace Seedling http://linkdata.org/work/rdf1s220i/Seedling.html#
#namespace Stem http://linkdata.org/work/rdf1s220i/Stem.html#
#namespace Whole_Plant http://linkdata.org/work/rdf1s220i/Whole_Plant.html#
#property motif position motif motif sequence CEG Leaf:ATGE_10 Leaf:ATGE_11 Leaf:ATGE_12 Leaf:ATGE_13 Leaf:ATGE_14 Leaf:ATGE_15 Leaf:ATGE_16 Leaf:ATGE_17 Leaf:ATGE_18 Leaf:ATGE_20 Leaf:ATGE_21 Leaf:ATGE_25 Leaf:ATGE_26 Leaf:ATGE_89 Leaf:ATGE_90 Leaf:ATGE_91
#object_type_xsd float string string float float float float float float float float float float float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
ATTED:At1g01030.html 49 | 51 | 53 | 88 HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:ATGGGCC TCTCTCT | TCTCTCT | TCTCTCT | ATGGGCC 0.06 | 0.07 | 0.06 | 0.08 0.0835 -0.0734 -0.2671 -0.4836 -0.3810 -0.5211 -0.3584 -0.1485 -0.2155 -0.1898 -0.2794 -0.6328 -0.3188 0.6017 0.4223 -0.0937
ATTED:At1g01050.html 31 HeptamerElement:ATATAAA ATATAAA 0.08 -0.1668 0.1051 0.1234 0.2288 0.3111 0.3151 0.2903 0.2029 0.1785 0.2185 0.0642 -0.3892 0.2231 -0.4486 -0.4730 -0.3786
ATTED:At1g01060.html 104 | 105 | 106 HeptamerElement:ACGTGTC | HeptamerElement:CACGTGT | HeptamerElement:CCACGTG ACGTGTC | CACGTGT | CCACGTG 0.09 | 0.10 | 0.07 0.3245 -0.5826 0.6259 0.1442 0.1119 -0.8339 -0.8621 -1.1736 0.1970 -0.3824 -0.1527 -0.0257 2.0983 -1.5480 -1.2817 -1.8942
ATTED:At1g01070.html 27 | 28 | 97 HeptamerElement:ATAAATA | HeptamerElement:TATAAAT | HeptamerElement:AAAATAT ATAAATA | TATAAAT | AAAATAT 0.08 | 0.10 | 0.07 -1.5577 -1.2787 1.0836 0.7917 0.3560 -0.4228 -1.0104 -1.4387 -1.2503 0.1955 0.1516 1.7637 1.0359 -1.2491 -1.2251 -0.7125
ATTED:At1g01080.html 95 | 96 HeptamerElement:ATGGGCC | HeptamerElement:AATGGGC ATGGGCC | AATGGGC 0.08 | 0.09 1.8521 1.8228 0.5989 0.9446 1.1096 1.4834 1.5623 1.6899 1.4799 1.4325 1.3080 -0.8575 0.2616 1.4371 1.2162 1.3385
ATTED:At1g01090.html 32 | 33 | 34 | 35 HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA TATATAA | ATATATA | TATATAT | ATATATA 0.11 | 0.10 | 0.10 | 0.10 0.2519 0.0230 -0.6169 -0.3751 -0.2721 -0.0563 0.0025 0.0022 -0.0418 -0.1156 -0.2342 -0.7277 -0.3310 0.3579 0.3235 0.1541
ATTED:At2g26500.html 40 | 41 HeptamerElement:GATATTT | HeptamerElement:AGATATT GATATTT | AGATATT 0.10 | 0.10 1.0711 1.2299 0.9680 1.1299 1.2549 1.2999 1.2664 1.1723 1.1406 1.2921 1.3050 0.0870 1.1004 0.8426 0.6877 1.0298
ATTED:At2g26510.html 61 HeptamerElement:ATAAATA ATAAATA 0.07 -0.4479 -0.3203 -0.0395 -0.1969 -0.2775 -0.4109 -0.3060 -0.1939 -0.1314 -0.4437 -0.4521 1.0811 0.3989 -0.1537 -0.1396 -0.1994
ATTED:At2g26520.html 60 HeptamerElement:AAATATC AAATATC 0.12 0.1343 -0.0625 -0.4821 -0.3750 -0.1413 -0.2076 -0.0931 0.1580 -0.0281 -0.1805 -0.3042 -0.9562 -0.6619 0.4489 0.7027 0.2139
ATTED:At2g26530.html 40 | 182 HeptamerElement:AATGGGC | HeptamerElement:AAATATC AATGGGC | AAATATC 0.07 | 0.07 -0.0511 2.1622 1.9232 1.7767 1.8517 1.6970 1.8229 2.1044 0.1536 1.7436 2.1375 0.8087 1.6292 0.1784 0.3169 1.3754
ATTED:At2g26540.html 66 | 67 | 87 | 88 | 89 | 132 | 133 HeptamerElement:TTGGGCT | HeptamerElement:ATTGGGC | HeptamerElement:TTGGGCT | HeptamerElement:ATTGGGC | HeptamerElement:TATTGGG | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC TTGGGCT | ATTGGGC | TTGGGCT | ATTGGGC | TATTGGG | TTGGGCC | ATTGGGC 0.07 | 0.08 | 0.06 | 0.08 | 0.06 | 0.07 | 0.07 1.3251 1.1758 0.0891 0.1643 0.5340 0.7680 0.8544 1.1059 1.0790 0.5631 0.4567 -1.2938 -0.2917 1.2541 1.0308 0.7981
ATTED:At2g26550.html 120 HeptamerElement:AATAATT AATAATT 0.07 1.3018 0.9715 -0.0258 0.2002 0.2050 0.6548 0.7534 1.0168 1.0060 0.6655 0.4999 -1.3513 -0.1962 1.2108 1.0391 1.1952
ATTED:At2g26560.html 27 | 28 | 29 | 30 | 176 HeptamerElement:ATAAATA | HeptamerElement:TATAAAT | HeptamerElement:CTATAAA | HeptamerElement:CCTATAA | HeptamerElement:AAAAGTC ATAAATA | TATAAAT | CTATAAA | CCTATAA | AAAAGTC 0.08 | 0.10 | 0.09 | 0.07 | 0.07 -0.4190 2.1528 4.0345 3.5797 2.9999 2.3985 2.5515 1.4387 0.1578 2.8989 3.1791 4.6131 2.9553 -0.5685 0.5355 0.9012
ATTED:At2g26590.html 86 | 87 | 88 | 151 HeptamerElement:TGGGCTT | HeptamerElement:TTGGGCT | HeptamerElement:A:ATTGGGC | HeptamerElement:TTGACTT TGGGCTT | TTGGGCT | ATTGGGC | TTGACTT 0.09 | 0.06 | 0.08 | 0.06 -0.0473 -0.1066 -0.0420 -0.1998 -0.2509 -0.1634 -0.2081 -0.0843 -0.1643 -0.3925 -0.3070 0.3369 -0.1318 0.1049 0.1962 -0.2688
ATTED:At1g01010.html 0.0424 -0.4100 0.0115 -0.0312 -0.1111 -0.2407 -0.5380 -0.5924 -0.5081 -0.3261 -0.0879 -0.4018 0.9701 -0.0213 -0.3242 -0.3549 -0.2591
ATTED:At1g01040.html -0.1965 -0.5186 0.2068 0.2119 -0.2262 -0.2691 -0.5377 -0.5803 -0.3410 -0.2188 0.1599 -0.4384 0.8637 0.4282 -0.4340 -0.9605 0.3007
ATTED:At2g26570.html 0.4860 0.4544 0.2371 0.4225 0.4197 0.3824 0.3616 0.0598 0.4730 0.2340 0.5516 0.3323 0.4901 -0.1414 -0.2880 0.3062 -0.5074
ATTED:At2g26580.html 1.3417 1.4808 1.2196 1.2952 1.2997 1.4789 1.4527 1.2047 0.7949 0.8131 1.2964 0.7656 0.7389 -1.4288 0.4470 1.5613 -0.5032
* Row count is limited to 100.