PromoterCAD

Developmental Genomic (AtGenExpress + PPDB promoter motif) normalized

Normalized Expression Data of AtGenExpress plant developmental tissues, combined with LDSS sequence analysis of regulatory (8mer) motif calculations (PPDB).

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101

Descriptions for each data table:

AtGenExpress_PPDB_Flowering_normalize	This collection of Gene Expression Properties are associated with flowering tissues.
AtGenExpress_PPDB_Fruit_Seeds_normalize	This collection of Gene Expression Properties are associated with fruit and seed tissues.
AtGenExpress_PPDB_Leaf_normalize	This collection of Gene Expression Properties are associated with leaf tissues.
AtGenExpress_PPDB_Root_normalize	This collection of Gene Expression Properties are associated with root tissues.
AtGenExpress_PPDB_Seedling_normalize	This collection of Gene Expression Properties are associated with seedling tissues.
AtGenExpress_PPDB_Stem_normalize	This collection of Gene Expression Properties are associated with stem tissues.
AtGenExpress_PPDB_Whole_Plant_normalize	This collection of Gene Expression Properties are associated with whole plant body parts.

License

We would like to thank Dr. Yoshiharu Yamamoto for supplying the data of PPDB (Plant Promoter Database) for PromoterCAD & GenoCon2 competition. License of this work's data is according to the intentions of the PPDB original data source.
http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/license.cgi

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File Name
AtGenExpress_PPDB_Flowering_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.5.10	8.7MB
Table Data (Excel)	2013.5.10	14.7MB
RDF (Turtle)	2013.5.10	38.8MB
		その他の形式のAPIリストを表示
AtGenExpress_PPDB_Fruit_Seeds_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.5.10	4.6MB
Table Data (Excel)	2013.5.10	7.0MB
RDF (Turtle)	2013.5.10	15.4MB
		その他の形式のAPIリストを表示
AtGenExpress_PPDB_Leaf_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.5.10	6.0MB
Table Data (Excel)	2013.5.10	9.6MB
RDF (Turtle)	2013.5.10	23.6MB
		その他の形式のAPIリストを表示
AtGenExpress_PPDB_Root_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.5.10	4.2MB
Table Data (Excel)	2013.5.10	6.2MB
RDF (Turtle)	2013.5.10	13.7MB
		その他の形式のAPIリストを表示
AtGenExpress_PPDB_Seedling_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.5.10	5.3MB
Table Data (Excel)	2013.5.10	8.3MB
RDF (Turtle)	2013.5.10	19.6MB
		その他の形式のAPIリストを表示
AtGenExpress_PPDB_Stem_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.5.10	3.7MB
Table Data (Excel)	2013.5.10	5.2MB
RDF (Turtle)	2013.5.10	10.6MB
		その他の形式のAPIリストを表示
AtGenExpress_PPDB_Whole_Plant_normalize			Action Show Table Data Contents Show API List Show Map Validate RDF Reuse Table Data
Table Data (Text)	2013.5.10	3.7MB
Table Data (Excel)	2013.5.10	5.1MB
RDF (Turtle)	2013.5.10	10.6MB
		その他の形式のAPIリストを表示

Web Search

Contributor Send Message	Koro_Nishikata
Collaborators	Robert Cox
Website	http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-... http://arabidopsis.org/servlets/TairOb...
Reference	http://www.ncbi.nlm.nih.gov/pubmed/179... http://www.ncbi.nlm.nih.gov/pubmed/173... http://www.ncbi.nlm.nih.gov/pubmed/158...
Total downloads	585
Created date	Mar 5, 2013
Last update date	May 10, 2013

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Developmental Genomic (AtGenExpress + PPDB promoter motif) normalized

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