PromoterCAD

Developmental Genomic (AtGenExpress + PPDB promoter motif) normalized

Normalized Expression Data of AtGenExpress plant developmental tissues, combined with LDSS sequence analysis of regulatory (8mer) motif calculations (PPDB).

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for AtGenExpress)
http://www.ncbi.nlm.nih.gov/pubmed/15806101

Descriptions for each data table:

AtGenExpress_PPDB_Flowering_normalize	This collection of Gene Expression Properties are associated with flowering tissues.
AtGenExpress_PPDB_Fruit_Seeds_normalize	This collection of Gene Expression Properties are associated with fruit and seed tissues.
AtGenExpress_PPDB_Leaf_normalize	This collection of Gene Expression Properties are associated with leaf tissues.
AtGenExpress_PPDB_Root_normalize	This collection of Gene Expression Properties are associated with root tissues.
AtGenExpress_PPDB_Seedling_normalize	This collection of Gene Expression Properties are associated with seedling tissues.
AtGenExpress_PPDB_Stem_normalize	This collection of Gene Expression Properties are associated with stem tissues.
AtGenExpress_PPDB_Whole_Plant_normalize	This collection of Gene Expression Properties are associated with whole plant body parts.

License

We would like to thank Dr. Yoshiharu Yamamoto for supplying the data of PPDB (Plant Promoter Database) for PromoterCAD & GenoCon2 competition. License of this work's data is according to the intentions of the PPDB original data source.
http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/license.cgi

value

useful

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#LINK
#lang	en
#attribution_name	GenoCon
#attribution_url	http://promotercad.org
#file_name	AtGenExpress_PPDB_Fruit_Seeds_normalize
#download_from	http://linkdata.org/work/rdf1s707i
#namespace	ATTED	http://atted.jp/data/locus/
#namespace	Gene	http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace	OctamerElement	http://linkdata.org/work/rdf1s329i/Octamer_elements.html#
#namespace	PLACE	http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace	PPDB	http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace	TAIR	http://arabidopsis.org/servlets/TairObject?type=locus&name=
#namespace	genome_version	http://www.arabidopsis.org/portals/genAnnotation/gene_structural_annotation/
#property	PPDB motif	motif type	motif sequence	motif position	genome_version:annotation_data.jsp	label:Col-0_sil3	label:Col-0_sil4	label:Col-0_sil5	label:Col-0_seed6	label:Col-0_seed7	label:Col-0_seed8	label:Col-0_seed9	label:Col-0_seed10
#object_type_xsd	string	string	string	string	string	string	string	string	string	string	string	string	string
#property_context	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion	Assertion
Gene:AT1G01010	OctamerElement:AtREG514 \| OctamerElement:AtREG519	REG	TCGGTTTA \| CGGTTTAC	209.5 \| 208.5	TAIR9	-1.3116	-1.3674	-1.3681	-1.3875	-0.9757	-0.8526	-0.8317	-0.7290
Gene:AT1G01010	OctamerElement:AtREG473 \| OctamerElement:AtREG412 \| OctamerElement:AtREG521	REG	TTAAACCG \| TAAACCGG \| AAACCGGA	129.5 \| 128.5 \| 127.5	TAIR9	-1.3116	-1.3674	-1.3681	-1.3875	-0.9757	-0.8526	-0.8317	-0.7290
Gene:AT1G01010	OctamerElement:AtREG626	REG	AAACGCTG	63.5	TAIR9	-1.3116	-1.3674	-1.3681	-1.3875	-0.9757	-0.8526	-0.8317	-0.7290
Gene:AT1G01060	OctamerElement:AtREG623	REG	ATACCCTT	130.5	TAIR9	-0.4806	-1.6269	-1.8579	0.1687	-0.0330	-0.7066	-0.0449	-0.8595
Gene:AT1G01060	OctamerElement:AtREG478 \| OctamerElement:AtREG366 \| OctamerElement:AtREG382 \| OctamerElement:AtREG544	REG	ACGTGTCG \| CACGTGTC \| CCACGTGT \| ACCACGTG	167.5 \| 168.5 \| 169.5 \| 170.5	TAIR9	-0.4806	-1.6269	-1.8579	0.1687	-0.0330	-0.7066	-0.0449	-0.8595
Gene:AT1G01070	OctamerElement:AtREG462	REG	GGGCTTAT	68.5	TAIR9	-2.1281	-2.8113	-1.2108	-0.3310	0.3386	-0.5519	-0.4718	-0.6322
Gene:AT1G01080	OctamerElement:AtREG375 \| OctamerElement:AtREG442 \| OctamerElement:AtREG405 \| OctamerElement:AtREG390 \| OctamerElement:AtREG617	REG	CCGACCCG \| CCCGACCC \| ACCCGACC \| GACCCGAC \| TGACCCGA	43.5 \| 44.5 \| 45.5 \| 46.5 \| 47.5	TAIR9	-0.3498	-1.5535	-1.6695	-2.0785	-2.6145	-3.5744	-3.9964	-3.8221
Gene:AT1G01080	OctamerElement:AtREG459 \| OctamerElement:AtREG359 \| OctamerElement:AtREG353 \| OctamerElement:AtREG356 \| OctamerElement:AtREG373	REG	GGCCTTTT \| GGGCCTTT \| TGGGCCTT \| TTGGGCCT \| TTTGGGCC	144.5 \| 145.5 \| 146.5 \| 147.5 \| 148.5	TAIR9	-0.3498	-1.5535	-1.6695	-2.0785	-2.6145	-3.5744	-3.9964	-3.8221
Gene:AT1G01080	OctamerElement:AtREG437 \| OctamerElement:AtREG490 \| OctamerElement:AtREG361 \| OctamerElement:AtREG643	REG	TGGGCCAT \| ATGGGCCA \| AATGGGCC \| GAATGGGC	285.5 \| 286.5 \| 287.5 \| 288.5	TAIR9	-0.3498	-1.5535	-1.6695	-2.0785	-2.6145	-3.5744	-3.9964	-3.8221
Gene:AT1G01090	OctamerElement:AtREG523	REG	GTGGGTCC	90.5	TAIR9	-0.6602	0.5857	0.9187	1.0004	0.6967	-0.4711	-1.1750	-1.6676
Gene:AT1G01100	OctamerElement:AtREG635 \| OctamerElement:AtREG403 \| OctamerElement:AtREG380	REG	GCCCATCA \| GGCCCATC \| CGGCCCAT	59.5 \| 60.5 \| 61.5	TAIR9	-0.0637	-0.2261	-0.1528	0.0710	0.0048	-0.4309	-0.6299	-0.6643
Gene:AT1G01100	OctamerElement:AtREG475 \| OctamerElement:AtREG358 \| OctamerElement:AtREG354 \| OctamerElement:AtREG361 \| OctamerElement:AtREG386	REG	GGGCCTAG \| TGGGCCTA \| ATGGGCCT \| AATGGGCC \| AAATGGGC	81.5 \| 82.5 \| 83.5 \| 84.5 \| 85.5	TAIR9	-0.0637	-0.2261	-0.1528	0.0710	0.0048	-0.4309	-0.6299	-0.6643
Gene:AT1G01100	OctamerElement:AtREG355 \| OctamerElement:AtREG352 \| OctamerElement:AtREG356 \| OctamerElement:AtREG353	REG	GCCCAATA \| GGCCCAAT \| AGGCCCAA \| AAGGCCCA	120.5 \| 121.5 \| 122.5 \| 123.5	TAIR9	-0.0637	-0.2261	-0.1528	0.0710	0.0048	-0.4309	-0.6299	-0.6643
Gene:AT1G01100	OctamerElement:AtREG533 \| OctamerElement:AtREG469 \| OctamerElement:AtREG421	REG	TTGGGCTC \| TTTGGGCT \| ATTTGGGC	164.5 \| 165.5 \| 166.5	TAIR9	-0.0637	-0.2261	-0.1528	0.0710	0.0048	-0.4309	-0.6299	-0.6643
Gene:AT1G01100	OctamerElement:AtREG632	REG	AAAGTCAA	182.5	TAIR9	-0.0637	-0.2261	-0.1528	0.0710	0.0048	-0.4309	-0.6299	-0.6643
Gene:AT1G01110	OctamerElement:AtREG599	REG	GGTGTCGT	164.5	TAIR9	-1.0936	-1.5663	-1.4555	-1.1174	-1.2955	-1.2510	-1.2012	-1.1086
Gene:AT1G01120	OctamerElement:AtREG620	REG	CCCATATA	168.5	TAIR9	0.6545	0.3449	0.1657	-0.6982	0.4313	0.5128	0.4323	0.1198
Gene:AT1G01130	OctamerElement:AtREG611 \| OctamerElement:AtREG417 \| OctamerElement:AtREG355	REG	CCAATAAG \| CCCAATAA \| GCCCAATA	83.5 \| 84.5 \| 85.5	TAIR9	-0.4094	-0.5578	-0.4560	-0.1215	-0.5150	-0.9616	-1.1274	-0.9689
Gene:AT1G01140	OctamerElement:AtREG395	REG	GCGCGTGA	52.5	TAIR9	1.1729	0.9327	1.1014	0.0696	-0.5777	-3.5669	-4.6614	-4.6999
Gene:AT1G01140	OctamerElement:AtREG523 \| OctamerElement:AtREG615	REG	GGACCCAC \| GGGACCCA	65.5 \| 66.5	TAIR9	1.1729	0.9327	1.1014	0.0696	-0.5777	-3.5669	-4.6614	-4.6999
Gene:AT1G01140	OctamerElement:AtREG448 \| OctamerElement:AtREG379 \| OctamerElement:AtREG413	REG	CGTGGCAT \| ACGTGGCA \| TACGTGGC	76.5 \| 77.5 \| 78.5	TAIR9	1.1729	0.9327	1.1014	0.0696	-0.5777	-3.5669	-4.6614	-4.6999
Gene:AT1G01160	OctamerElement:AtREG507 \| OctamerElement:AtREG504 \| OctamerElement:AtREG354 \| OctamerElement:AtREG353 \| OctamerElement:AtREG351 \| OctamerElement:AtREG577	REG	CCATGGGC \| CATGGGCC \| ATGGGCCT \| TGGGCCTT \| GGGCCTTA \| GGCCTTAG	215.5 \| 214.5 \| 213.5 \| 212.5 \| 211.5 \| 210.5	TAIR9	-0.3645	-0.3885	-0.3658	0.0323	0.1468	0.3011	0.4040	0.3933
Gene:AT1G01160	OctamerElement:AtREG563 \| OctamerElement:AtREG360 \| OctamerElement:AtREG358 \| OctamerElement:AtREG356 \| OctamerElement:AtREG373 \| OctamerElement:AtREG421	REG	CTTAGGCC \| TTAGGCCC \| TAGGCCCA \| AGGCCCAA \| GGCCCAAA \| GCCCAAAT	196.5 \| 195.5 \| 194.5 \| 193.5 \| 192.5 \| 191.5	TAIR9	-0.3645	-0.3885	-0.3658	0.0323	0.1468	0.3011	0.4040	0.3933
Gene:AT1G01160	OctamerElement:AtREG446 \| OctamerElement:AtREG484 \| OctamerElement:AtREG420 \| OctamerElement:AtREG373 \| OctamerElement:AtREG421	REG	ATTGGCCC \| TTGGCCCA \| TGGCCCAA \| GGCCCAAA \| GCCCAAAT	168.5 \| 167.5 \| 166.5 \| 165.5 \| 164.5	TAIR9	-0.3645	-0.3885	-0.3658	0.0323	0.1468	0.3011	0.4040	0.3933
Gene:AT1G01170	OctamerElement:AtREG386	REG	GCCCATTT	63.5	TAIR9	-0.4084	-1.1897	-0.8599	-0.6637	-0.4210	1.1696	1.3386	1.3279
Gene:AT1G01180	OctamerElement:AtREG470 \| OctamerElement:AtREG557 \| OctamerElement:AtREG632	REG	AGACACGT \| GACACGTA \| AAAGTCAA	164.5 \| 163.5 \| 156.5	TAIR9	-0.3032	-0.1781	-0.1934	0.0446	-0.1583	0.0519	0.3039	0.2112
Gene:AT1G01230	OctamerElement:AtREG424	REG	GGCCTATT	101.5	TAIR9	-0.2610	-0.1022	-0.0329	0.5515	0.7518	0.8936	1.1803	1.1402
Gene:AT1G01240	OctamerElement:AtREG590 \| OctamerElement:AtREG590	REG	AACACGTG \| CACGTGTT	133.5 \| 131.5	TAIR9	-1.0383	-0.7564	-0.4180	0.1417	0.5576	1.2762	1.2703	1.2418
Gene:AT1G01240	OctamerElement:AtREG527 \| OctamerElement:AtREG569 \| OctamerElement:AtREG520	REG	GTGTCGTT \| TGTCGTTT \| GTCGTTTT	72.5 \| 71.5 \| 70.5	TAIR9	-1.0383	-0.7564	-0.4180	0.1417	0.5576	1.2762	1.2703	1.2418
Gene:AT1G01260	OctamerElement:AtREG636	REG	TAAGGGGT	171.5	TAIR9	-0.5419	-0.0873	0.0118	0.3949	0.4884	0.4439	0.3720	0.2678
Gene:AT1G01260	OctamerElement:AtREG463 \| OctamerElement:AtREG455 \| OctamerElement:AtREG412 \| OctamerElement:AtREG473	REG	GACCCGGT \| ACCCGGTT \| CCGGTTTA \| CGGTTTAA	114.5 \| 113.5 \| 111.5 \| 110.5	TAIR9	-0.5419	-0.0873	0.0118	0.3949	0.4884	0.4439	0.3720	0.2678
Gene:AT1G01320	OctamerElement:AtREG411	REG	AGAGGCCC	144.5	TAIR9	-1.4260	-1.2104	-1.4298	-2.2798	-2.7165	-3.1472	-3.4031	-3.4269
Gene:AT1G01320	OctamerElement:AtREG396 \| OctamerElement:AtREG357 \| OctamerElement:AtREG361 \| OctamerElement:AtREG354 \| OctamerElement:AtREG358 \| OctamerElement:AtREG360 \| OctamerElement:AtREG563	REG	CCCATTAA \| GCCCATTA \| GGCCCATT \| AGGCCCAT \| TAGGCCCA \| TTAGGCCC \| CTTAGGCC	159.5 \| 160.5 \| 161.5 \| 162.5 \| 163.5 \| 164.5 \| 165.5	TAIR9	-1.4260	-1.2104	-1.4298	-2.2798	-2.7165	-3.1472	-3.4031	-3.4269
Gene:AT1G01370	OctamerElement:AtREG642	REG	AGGGGTAA	224.5	TAIR9	-1.3811	-1.3219	-1.5163	-1.7916	-1.9771	-2.3164	-1.6790	-2.2492
Gene:AT1G01430	OctamerElement:AtREG608	REG	AAGCCACG	199.5	TAIR9	0.1104	-0.0337	0.0881	-0.5471	-1.2082	-1.9864	-2.2277	-2.5061
Gene:AT1G01470	OctamerElement:AtREG638	REG	GACCGACT	65.5	TAIR9	-0.7056	-0.0291	0.3240	-0.3210	0.3918	1.0192	1.1933	1.2261
Gene:AT1G01470	OctamerElement:AtREG588	REG	TCACACGT	108.5	TAIR9	-0.7056	-0.0291	0.3240	-0.3210	0.3918	1.0192	1.1933	1.2261
Gene:AT1G01470	OctamerElement:AtREG557 \| OctamerElement:AtREG470	REG	GACACGTA \| AGACACGT	151.5 \| 152.5	TAIR9	-0.7056	-0.0291	0.3240	-0.3210	0.3918	1.0192	1.1933	1.2261
Gene:AT1G01480	OctamerElement:AtREG591	REG	CCCATGGG	74.5	TAIR9	-1.4699	-2.6073	-2.7626	-2.4846	-0.1385	1.2605	1.4558	1.3497
Gene:AT1G01490	OctamerElement:AtREG395	REG	TCACGCGC	209.5	TAIR9	-1.0176	-1.1462	-0.4902	0.2281	0.3098	0.4431	0.5272	0.1008
Gene:AT1G01490	OctamerElement:AtREG486	REG	CACGCGCC	222.5	TAIR9	-1.0176	-1.1462	-0.4902	0.2281	0.3098	0.4431	0.5272	0.1008
Gene:AT1G01500	OctamerElement:AtREG426 \| OctamerElement:AtREG378 \| OctamerElement:AtREG372 \| OctamerElement:AtREG386 \| OctamerElement:AtREG443 \| OctamerElement:AtREG610	REG	TAAGCCCA \| AAGCCCAT \| AGCCCATT \| GCCCATTT \| CCCATTTA \| TTTAACGG	221.5 \| 220.5 \| 219.5 \| 218.5 \| 217.5 \| 213.5	TAIR9	-1.6110	-1.1180	-1.0171	-1.3130	-1.1203	-1.4677	-0.8940	-1.0119
Gene:AT1G01500	OctamerElement:AtREG437 \| OctamerElement:AtREG458 \| OctamerElement:AtREG384	REG	ATGGCCCA \| TGGCCCAG \| GGCCCAGT	191.5 \| 190.5 \| 189.5	TAIR9	-1.6110	-1.1180	-1.0171	-1.3130	-1.1203	-1.4677	-0.8940	-1.0119
Gene:AT1G01500	OctamerElement:AtREG589	REG	AAAAAGCC	156.5	TAIR9	-1.6110	-1.1180	-1.0171	-1.3130	-1.1203	-1.4677	-0.8940	-1.0119
Gene:AT1G01500	OctamerElement:AtREG588 \| OctamerElement:AtREG460 \| OctamerElement:AtREG541	REG	TCACACGT \| CACACGTG \| CACGTGCG	137.5 \| 136.5 \| 134.5	TAIR9	-1.6110	-1.1180	-1.0171	-1.3130	-1.1203	-1.4677	-0.8940	-1.0119
Gene:AT1G01500	OctamerElement:AtREG567 \| OctamerElement:AtREG602	REG	AGGGTATT \| GGGTATTT	110.5 \| 109.5	TAIR9	-1.6110	-1.1180	-1.0171	-1.3130	-1.1203	-1.4677	-0.8940	-1.0119
Gene:AT1G01500	OctamerElement:AtREG592	REG	TTTGACCC	80.5	TAIR9	-1.6110	-1.1180	-1.0171	-1.3130	-1.1203	-1.4677	-0.8940	-1.0119
Gene:AT1G01500	OctamerElement:AtREG646	REG	CGTAATTA	69.5	TAIR9	-1.6110	-1.1180	-1.0171	-1.3130	-1.1203	-1.4677	-0.8940	-1.0119
Gene:AT1G01510	OctamerElement:AtREG540 \| OctamerElement:AtREG537 \| OctamerElement:AtREG439 \| OctamerElement:AtREG415 \| OctamerElement:AtREG565	REG	ACGGCGTC \| GGCGTCGT \| GCGTCGTT \| CGTCGTTT \| GTCGTTTA	208.5 \| 206.5 \| 205.5 \| 204.5 \| 203.5	TAIR9	-0.2744	-0.2397	-0.1392	0.1673	-0.0420	-1.3205	-1.7910	-1.9269
Gene:AT1G01510	OctamerElement:AtREG578	REG	GATGACGT	179.5	TAIR9	-0.2744	-0.2397	-0.1392	0.1673	-0.0420	-1.3205	-1.7910	-1.9269
Gene:AT1G01510	OctamerElement:AtREG529 \| OctamerElement:AtREG373 \| OctamerElement:AtREG392 \| OctamerElement:AtREG400	REG	TTTTGGGC \| TTTGGGCC \| TTGGGCCC \| TGGGCCCT	112.5 \| 111.5 \| 110.5 \| 109.5	TAIR9	-0.2744	-0.2397	-0.1392	0.1673	-0.0420	-1.3205	-1.7910	-1.9269
Gene:AT1G01540	OctamerElement:AtREG630	REG	CGACATCG	155.5	TAIR9	-0.5632	-0.5273	-0.2466	-0.4566	-0.5746	-0.8667	-0.9389	-1.1527
Gene:AT1G01550	OctamerElement:AtREG632	REG	TTGACTTT	194.5	TAIR9	-0.4941	-0.1175	-0.1026	-0.2607	-0.0484	0.2503	0.2760	0.3506
Gene:AT1G01560	OctamerElement:AtREG507	REG	CCATGGGC	203.5	TAIR9	-2.1868	-3.3078	-3.0873	-3.2168	-3.0480	-2.1083	-1.8274	-1.4310
Gene:AT1G01620	OctamerElement:AtREG553 \| OctamerElement:AtREG554	REG	CAACGGTC \| TCCAACGG	444.5 \| 446.5	TAIR9	0.0575	-0.9116	-0.4226	-0.6282	-1.3799	-3.3166	-4.3005	-5.2646
Gene:AT1G01620	OctamerElement:AtREG475	REG	CTAGGCCC	525.5	TAIR9	0.0575	-0.9116	-0.4226	-0.6282	-1.3799	-3.3166	-4.3005	-5.2646
Gene:AT1G01630	OctamerElement:AtREG440 \| OctamerElement:AtREG419 \| OctamerElement:AtREG485	REG	CTGACGTG \| TGACGTGG \| TGGGCTCA	208.5 \| 207.5 \| 202.5	TAIR9	-1.7932	-1.7538	-1.7922	-2.3206	-2.6856	-3.2366	-3.7511	-4.1708
Gene:AT1G01630	OctamerElement:AtREG531	REG	AAAACGGC	187.5	TAIR9	-1.7932	-1.7538	-1.7922	-2.3206	-2.6856	-3.2366	-3.7511	-4.1708
Gene:AT1G01630	OctamerElement:AtREG533 \| OctamerElement:AtREG402 \| OctamerElement:AtREG355 \| OctamerElement:AtREG624	REG	GAGCCCAA \| AGCCCAAT \| GCCCAATA \| CCCAATAG	104.5 \| 103.5 \| 102.5 \| 101.5	TAIR9	-1.7932	-1.7538	-1.7922	-2.3206	-2.6856	-3.2366	-3.7511	-4.1708
Gene:AT1G01630	OctamerElement:AtREG425 \| OctamerElement:AtREG351 \| OctamerElement:AtREG353 \| OctamerElement:AtREG356 \| OctamerElement:AtREG352 \| OctamerElement:AtREG355	REG	ATAAGGCC \| TAAGGCCC \| AAGGCCCA \| AGGCCCAA \| GGCCCAAT \| GCCCAATA	87.5 \| 86.5 \| 85.5 \| 84.5 \| 83.5 \| 82.5	TAIR9	-1.7932	-1.7538	-1.7922	-2.3206	-2.6856	-3.2366	-3.7511	-4.1708
Gene:AT1G01650	OctamerElement:AtREG564 \| OctamerElement:AtREG626	REG	GCGTTTTA \| CAGCGTTT	1082.5 \| 1084.5	TAIR9	0.0043	-0.6353	-0.7067	-0.4279	-0.0590	0.8912	1.2535	1.3418
Gene:AT1G01650	OctamerElement:AtREG632	REG	AAAGTCAA	1095.5	TAIR9	0.0043	-0.6353	-0.7067	-0.4279	-0.0590	0.8912	1.2535	1.3418
Gene:AT1G01650	OctamerElement:AtREG486	REG	CACGCGCC	1129.5	TAIR9	0.0043	-0.6353	-0.7067	-0.4279	-0.0590	0.8912	1.2535	1.3418
Gene:AT1G01650	OctamerElement:AtREG536	REG	ACACGCGT	1139.5	TAIR9	0.0043	-0.6353	-0.7067	-0.4279	-0.0590	0.8912	1.2535	1.3418
Gene:AT1G01650	OctamerElement:AtREG449 \| OctamerElement:AtREG420 \| OctamerElement:AtREG484	REG	GGCCCAAC \| TGGCCCAA \| TTGGCCCA	182.5 \| 183.5 \| 184.5	TAIR9	0.0043	-0.6353	-0.7067	-0.4279	-0.0590	0.8912	1.2535	1.3418
Gene:AT1G01670	OctamerElement:AtREG428 \| OctamerElement:AtREG478 \| OctamerElement:AtREG481 \| OctamerElement:AtREG517 \| OctamerElement:AtREG466 \| OctamerElement:AtREG489	REG	CGTGTCGT \| ACGTGTCG \| GACGTGTC \| TGACGTGT \| GTGACGTG \| CGTGACGT	62.5 \| 63.5 \| 64.5 \| 65.5 \| 66.5 \| 67.5	TAIR9	0.4235	0.0658	-0.1595	-0.1920	-0.2073	-0.2974	-0.0764	-0.1286
Gene:AT1G01690	OctamerElement:AtREG417	REG	TTATTGGG	188.5	TAIR9	-0.5515	-0.6260	-0.6267	-0.3285	-0.1123	0.3456	0.6327	0.6845
Gene:AT1G01690	OctamerElement:AtREG364 \| OctamerElement:AtREG490 \| OctamerElement:AtREG437	REG	TATGGGCC \| ATGGGCCA \| TGGGCCAT	169.5 \| 168.5 \| 167.5	TAIR9	-0.5515	-0.6260	-0.6267	-0.3285	-0.1123	0.3456	0.6327	0.6845
Gene:AT1G01690	OctamerElement:AtREG558 \| OctamerElement:AtREG357 \| OctamerElement:AtREG372 \| OctamerElement:AtREG378 \| OctamerElement:AtREG376 \| OctamerElement:AtREG365 \| OctamerElement:AtREG601 \| OctamerElement:AtREG394 \| OctamerElement:AtREG364 \| OctamerElement:AtREG354 \| OctamerElement:AtREG447 \| OctamerElement:AtREG411	REG	CTAATGGG \| TAATGGGC \| AATGGGCT \| ATGGGCTT \| TGGGCTTT \| GGGCTTTA \| GGCTTTAT \| TTATGGGC \| TATGGGCC \| ATGGGCCT \| TGGGCCTC \| GGGCCTCT	149.5 \| 148.5 \| 147.5 \| 146.5 \| 145.5 \| 144.5 \| 143.5 \| 139.5 \| 138.5 \| 137.5 \| 136.5 \| 135.5	TAIR9	-0.5515	-0.6260	-0.6267	-0.3285	-0.1123	0.3456	0.6327	0.6845
Gene:AT1G01710	OctamerElement:AtREG504 \| OctamerElement:AtREG490 \| OctamerElement:AtREG437	REG	CATGGGCC \| ATGGGCCA \| TGGGCCAT	277.5 \| 276.5 \| 275.5	TAIR9	-0.0210	-0.0568	-0.2773	-0.5673	-0.4949	0.4111	0.6429	0.5824
Gene:AT1G01710	OctamerElement:AtREG416 \| OctamerElement:AtREG416 \| OctamerElement:AtREG545	REG	TTAAGGCC \| GGCCTTAA \| TTAAAGCC	239.5 \| 235.5 \| 231.5	TAIR9	-0.0210	-0.0568	-0.2773	-0.5673	-0.4949	0.4111	0.6429	0.5824
Gene:AT1G01710	OctamerElement:AtREG396 \| OctamerElement:AtREG357 \| OctamerElement:AtREG361 \| OctamerElement:AtREG354 \| OctamerElement:AtREG353 \| OctamerElement:AtREG398	REG	TTAATGGG \| TAATGGGC \| AATGGGCC \| ATGGGCCT \| TGGGCCTT \| GGGCCTTG	222.5 \| 221.5 \| 220.5 \| 219.5 \| 218.5 \| 217.5	TAIR9	-0.0210	-0.0568	-0.2773	-0.5673	-0.4949	0.4111	0.6429	0.5824
Gene:AT1G01710	OctamerElement:AtREG590 \| OctamerElement:AtREG628	REG	AACACGTG \| ACACGTGA	93.5 \| 92.5	TAIR9	-0.0210	-0.0568	-0.2773	-0.5673	-0.4949	0.4111	0.6429	0.5824
Gene:AT1G01710	OctamerElement:AtREG575	REG	CGAACCGA	71.5	TAIR9	-0.0210	-0.0568	-0.2773	-0.5673	-0.4949	0.4111	0.6429	0.5824
Gene:AT1G01710	OctamerElement:AtREG513	REG	GTCCACGT	63.5	TAIR9	-0.0210	-0.0568	-0.2773	-0.5673	-0.4949	0.4111	0.6429	0.5824
Gene:AT1G01710	OctamerElement:AtREG598 \| OctamerElement:AtREG412 \| OctamerElement:AtREG521	REG	ATAAACCG \| TAAACCGG \| AAACCGGA	47.5 \| 46.5 \| 45.5	TAIR9	-0.0210	-0.0568	-0.2773	-0.5673	-0.4949	0.4111	0.6429	0.5824
Gene:AT1G01720	OctamerElement:AtREG644	REG	ACCGGAAA	280.5	TAIR9	-2.1171	-1.8352	-2.3089	-1.3066	-0.0872	1.0266	1.5334	1.4579
Gene:AT1G01720	OctamerElement:AtREG451	REG	GGTTCGGT	242.5	TAIR9	-2.1171	-1.8352	-2.3089	-1.3066	-0.0872	1.0266	1.5334	1.4579
Gene:AT1G01720	OctamerElement:AtREG576 \| OctamerElement:AtREG569	REG	GAAACGAC \| AAACGACA	183.5 \| 182.5	TAIR9	-2.1171	-1.8352	-2.3089	-1.3066	-0.0872	1.0266	1.5334	1.4579
Gene:AT1G01720	OctamerElement:AtREG471 \| OctamerElement:AtREG371 \| OctamerElement:AtREG388 \| OctamerElement:AtREG419 \| OctamerElement:AtREG440 \| OctamerElement:AtREG515	REG	TCGCCACG \| CGCCACGT \| GCCACGTC \| CCACGTCA \| CACGTCAG \| ACGTCAGC	146.5 \| 145.5 \| 144.5 \| 143.5 \| 142.5 \| 141.5	TAIR9	-2.1171	-1.8352	-2.3089	-1.3066	-0.0872	1.0266	1.5334	1.4579
Gene:AT1G01720	OctamerElement:AtREG472	REG	ACGTGTCC	113.5	TAIR9	-2.1171	-1.8352	-2.3089	-1.3066	-0.0872	1.0266	1.5334	1.4579
Gene:AT1G01720	OctamerElement:AtREG464 \| OctamerElement:AtREG382 \| OctamerElement:AtREG460	REG	CCCACGTG \| CCACGTGT \| CACGTGTG	90.5 \| 89.5 \| 88.5	TAIR9	-2.1171	-1.8352	-2.3089	-1.3066	-0.0872	1.0266	1.5334	1.4579
Gene:AT1G01720	OctamerElement:AtREG478 \| OctamerElement:AtREG366 \| OctamerElement:AtREG366 \| OctamerElement:AtREG472	REG	CGACACGT \| GACACGTG \| CACGTGTC \| ACGTGTCC	50.5 \| 49.5 \| 47.5 \| 46.5	TAIR9	-2.1171	-1.8352	-2.3089	-1.3066	-0.0872	1.0266	1.5334	1.4579
Gene:AT1G01730	OctamerElement:AtREG520 \| OctamerElement:AtREG569 \| OctamerElement:AtREG527	REG	GTCGTTTT \| AAACGACA \| AACGACAC	169.5 \| 168.5 \| 167.5	TAIR9	-0.4689	-0.1312	-0.1178	-0.2897	-0.3692	0.0623	0.5514	0.6789

* Row count is limited to 100.

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Linkdata Work Information

Developmental Genomic (AtGenExpress + PPDB promoter motif) normalized