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DIURNAL gene expression + PLACE promoter motif

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the various sizes of motifs predicted by PLACE (Plant Cis-acting Regulatory DNA Elements) database. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE):
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_PLACE_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PLACE_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PLACE_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PLACE_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PLACE_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PLACE_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PLACE_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://www.dna.affrc.go.jp/PLACE/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PLACE_LDHC
#download_from http://linkdata.org/work/rdf1s746i
#namespace ATTED http://atted.jp/data/locus/
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif name motif sequence motif position Origin of baseline sequence Probe Condition Phase Correlation label:LDHC_0_hours label:LDHC_4_hours label:LDHC_8_hours label:LDHC_12_hours label:LDHC_16_hours label:LDHC_20_hours label:LDHC_24_hours label:LDHC_28_hours label:LDHC_32_hours label:LDHC_36_hours label:LDHC_40_hours label:LDHC_44_hours Sine Phase Sine Amplitude
#object_type_xsd string string string string string string string string string string string string string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
TAIR:ATMG00640 PLACE:S000483 SORLIP2AT GGGCC 79 PPDB 244901_at LDHC 1 0.458517 9.092620 7.247080 6.367590 6.781950 8.862180 6.413020 6.745090 7.231430 6.833010 6.198400 6.080800 6.613470 18.377207 0.212541
TAIR:ATMG00650 PLACE:S000394 | PLACE:S000414 | PLACE:S000483 | PLACE:S000153 ACGTABREMOTIFA2OSEM | ABRELATERD1 | SORLIP2AT | LTRECOREATCOR15 ACGTGTC | ACGTG | GGGCC | CCGAC 77 | 78 | 101 | 159 TAIR9 244902_at LDHC 19 0.653721 5.524890 4.050430 4.853250 4.679830 4.921960 5.468440 5.609920 5.496620 4.951190 5.219040 6.550160 6.112680 13.327992 0.284152
TAIR:ATMG00660 PLACE:S000483 | PLACE:S000474 | PLACE:S000474 | PLACE:S000167 | PLACE:S000507 SORLIP2AT | SITEIIATCYTC | SITEIIATCYTC | MYBPLANT | ABRERATCAL GGGCC | TGGGCC | TGGGCT | AACCAACC | AACGCGG 212 | 212.5 | 217.5 | 303.5 | 531 TAIR9 244903_at LDHC 4 0.620252 5.714640 8.816310 5.511540 4.561870 4.525340 6.167550 6.294760 6.240440 6.453190 6.471420 5.244960 7.229040 15.493572 0.455963
TAIR:ATMG00670 PLACE:S000477 | PLACE:S000111 | PLACE:S000111 | PLACE:S000477 ANAERO1CONSENSUS | TATABOX4 | TATABOX4 | ANAERO1CONSENSUS AAACAAA | TATATAA | TATATAA | AAACAAA 98 | 155 | 212 | 398 TAIR9 244904_at LDHC 7 0.477964 6.434680 5.542920 6.236180 6.870520 6.180410 5.893560 8.022740 7.584870 6.777820 6.332410 6.590350 5.777290 13.823006 0.138136
TAIR:ATMG00680 PLACE:S000153 LTRECOREATCOR15 CCGAC 478 TAIR9 244905_at LDHC 12 0.457445 4.760570 5.067510 4.505670 7.351290 4.799660 4.562470 4.738200 4.124260 5.403750 3.617960 4.532610 3.655770 7.957941 0.228187
TAIR:ATMG00690 PLACE:S000080 | PLACE:S000200 POLASIG1 | HBOXCONSENSUSPVCHS AATAAA | CCTACCTTAGAATCT 343.5 | 540 TAIR9 244906_at LDHC 12 0.581515 5.298950 5.895060 4.165010 4.889390 4.480230 4.454930 4.358700 4.121830 5.059460 7.093250 4.585700 4.846390 7.512271 0.163577
TAIR:ATMG00710 - - - - TAIR9 244907_at LDHC 15 0.522646 5.328630 6.335300 4.519340 6.904160 8.550820 5.506790 4.645260 5.353940 4.630780 4.519070 5.014960 4.803540 9.699977 0.265929
TAIR:ATMG00720 - - - - TAIR9 244908_at LDHC 12 0.671068 4.280870 4.903530 4.478610 5.667640 5.259950 3.991580 3.910520 4.571200 4.666410 4.280680 4.083550 4.077970 7.674555 0.205155
TAIR:ATMG00740 PLACE:S000477 | PLACE:S000507 | PLACE:S000477 ANAERO1CONSENSUS | ABRERATCAL | ANAERO1CONSENSUS AAACAAA | AACGTGG | AAACAAA 72 | 103 | 126 TAIR9 244909_at LDHC 8 0.322639 3.555020 4.095440 3.857030 4.108840 3.787860 4.032590 4.357470 4.111000 4.056010 3.857960 4.547940 3.594360 4.174412 0.024592
TAIR:ATMG00750 PLACE:S000507 | PLACE:S000474 ABRERATCAL | SITEIIATCYTC CACGCGG | TGGGCT 332 | 361.5 TAIR9 244910_s_at LDHC 14 0.695152 3.636820 4.239990 3.413680 4.757370 4.251730 3.690890 4.285860 3.915330 3.940080 4.122380 4.557850 3.859640 8.124132 0.116349
TAIR:AT2G07783 PLACE:S000149 CCA1ATLHCB1 AACAATCT 317.5 TAIR9 244912_at LDHC 2 0.710807 74.324800 86.649000 41.904600 43.258900 48.091200 33.249600 51.617600 43.706800 43.529500 23.172600 18.689200 41.018500 20.470547 8.950819
TAIR:ATMG00840 PLACE:S000426 UPRMOTIFIIAT CCCAGAGTAGCCAACCACG 107 TAIR9 244913_at LDHC 22 0.880462 4.677700 3.921210 3.486900 3.464400 3.878250 4.541790 4.111150 3.506610 3.391670 3.715430 3.316840 4.345820 16.039886 0.261125
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244914_at LDHC 3 0.522501 6.990980 8.406510 5.980460 7.562390 6.816640 6.255560 6.716340 7.023070 6.013910 5.141530 7.916300 5.731890 16.378734 0.123295
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244915_s_at LDHC 11 0.850298 3.890470 4.141560 3.975210 4.614950 4.119530 3.530920 3.704220 3.946830 4.836460 4.935330 4.177760 3.460240 7.677873 0.273488
TAIR:ATMG00880 PLACE:S000474 SITEIIATCYTC TGGGCT 409.5 TAIR9 244916_at LDHC 16 0.671809 3.230170 2.821290 3.549420 2.554670 3.940190 3.021570 2.867630 3.045720 3.360830 2.898230 3.480600 2.552030 5.118517 0.068509
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244917_at LDHC 0 0.685483 3.363340 3.579230 3.782660 3.395030 4.248370 3.913300 3.597530 3.843290 3.747360 2.976280 3.706820 3.653390 21.685897 0.049984
TAIR:ATMG00960 PLACE:S000507 ABRERATCAL AACGCGG 301 TAIR9 244919_at LDHC 7 0.480943 3.388780 3.245660 3.717970 3.160900 3.269260 3.388440 3.133140 3.896760 3.174660 3.778140 3.221110 3.011290 1.253305 0.087286
TAIR:ATMG00990 PLACE:S000483 | PLACE:S000483 | PLACE:S000071 | PLACE:S000483 | PLACE:S000474 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SORLIP2AT | NONAMERMOTIFTAH3H4 | SORLIP2AT | SITEIIATCYTC | SORLIP2AT | SITEIIATCYTC GGGCC | GGGCC | CATCCAACG | GGGCC | TGGGCC | GGGCC | TGGGCC 93 | 176 | 230 | 402 | 402.5 | 450 | 450.5 TAIR9 244920_s_at LDHC 0 0.598578 52.950500 41.299000 34.657600 30.489200 29.558900 48.537200 29.933200 33.190200 35.149400 29.486300 32.590300 37.326700 17.669474 3.103834
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244921_s_at LDHC 1 0.761269 28.291800 22.052100 20.898800 18.101600 20.623600 15.211300 22.506100 20.130300 15.699400 19.150900 19.078700 20.804400 18.691321 1.227906
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244922_s_at LDHC 8 0.499318 7.271850 6.639700 5.292040 7.099380 6.489730 5.749780 6.092090 5.677680 6.672730 6.046190 6.967440 5.372110 7.226669 0.067884
TAIR:ATMG01020 PLACE:S000477 | PLACE:S000111 ANAERO1CONSENSUS | TATABOX4 AAACAAA | TATATAA 95 | 159 TAIR9 244923_s_at LDHC 16 0.477846 6.273400 5.912370 5.514550 4.844940 6.699260 5.478730 6.826830 6.570340 6.624780 6.699250 7.184780 6.329320 14.444019 0.096267
TAIR:ATMG01040 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 376 TAIR9 244924_at LDHC 16 0.774767 6.142100 5.427340 5.762860 5.590470 7.615660 5.867020 5.637000 6.041890 5.250600 5.359420 6.223580 5.356870 11.573476 0.187394
TAIR:ATMG00510 PLACE:S000477 | PLACE:S000111 | PLACE:S000081 | PLACE:S000186 ANAERO1CONSENSUS | TATABOX4 | POLASIG2 | SURE1STPAT21 AAACAAA | TATATAA | AATTAAA | AATAGAAAA 151 | 293 | 408 | 414 TAIR9 244925_at LDHC 16 0.851678 14.311900 13.421800 13.158700 11.926800 20.076800 13.004400 10.463800 13.051300 17.649600 14.588400 21.338000 12.045600 3.777410 1.205909
TAIR:ATMG00520 PLACE:S000153 | PLACE:S000426 | PLACE:S000080 LTRECOREATCOR15 | UPRMOTIFIIAT | POLASIG1 CCGAC | CCTTTCACCTCTTCCCACG | AATAAA 179 | 357 | 516.5 TAIR9 244926_s_at LDHC 0 0.647876 4.042140 3.257020 3.555900 3.235240 3.700900 3.816900 3.434630 4.324780 4.309980 3.616560 2.992930 3.229880 22.397426 0.134897
TAIR:ATMG00530 PLACE:S000483 | PLACE:S000474 | PLACE:S000414 SORLIP2AT | SITEIIATCYTC | ABRELATERD1 GGGCC | TGGGCC | ACGTG 172 | 172.5 | 458 TAIR9 244927_at LDHC 8 0.722085 5.793370 5.334740 6.117600 5.793960 6.212750 5.959620 5.425070 5.282520 7.262920 5.047300 5.026290 5.229670 2.475804 0.142080
TAIR:ATMG00570 PLACE:S000111 | PLACE:S000153 TATABOX4 | LTRECOREATCOR15 TATATAA | CCGAC 184 | 549 TAIR9 244928_s_at LDHC 20 0.487565 6.683470 6.436140 6.846110 7.357590 8.301150 6.657620 6.470640 7.919900 6.309030 5.121230 5.964790 7.907060 15.418466 0.152220
TAIR:AT2G07717 PLACE:S000167 | PLACE:S000192 | PLACE:S000080 | PLACE:S000109 MYBPLANT | ACIPVPAL2 | POLASIG1 | TATABOX2 CACCTACC | CCCACCTACC | AATAAA | TATAAAT 33.5 | 34.5 | 125.5 | 129 TAIR9 244929_at LDHC 0 0.658406 176.137000 118.106000 139.704000 135.810000 138.923000 129.096000 140.982000 116.121000 116.377000 145.897000 105.499000 127.158000 19.096969 2.641604
TAIR:AT2G07809 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 17 | 207.5 TAIR9 244930_at LDHC 4 0.737668 3.650900 3.762530 3.801490 3.413880 3.673200 3.610500 4.023180 3.618490 4.037240 3.509600 3.497640 3.466270 22.038881 0.080543
TAIR:ATMG00630 PLACE:S000483 | PLACE:S000483 SORLIP2AT | SORLIP2AT GGGCC | GGGCC 387 | 428 TAIR9 244931_at LDHC 13 0.876018 5.725830 5.507350 5.953590 7.392680 6.789100 5.452140 5.525370 6.684720 7.129690 7.654520 7.288820 5.553650 5.890308 0.481671
TAIR:ATCG01060 PLACE:S000149 CCA1ATLHCB1 AAAAATCT 80.5 TAIR9 244932_at LDHC 1 0.634459 1241.360000 1082.060000 775.549000 694.627000 822.091000 786.837000 682.232000 623.486000 526.826000 528.632000 711.999000 892.556000 18.690128 82.557997
TAIR:ATCG01070 PLACE:S000483 | PLACE:S000477 | PLACE:S000185 SORLIP2AT | ANAERO1CONSENSUS | SURE2STPAT21 GGGCC | AAACAAA | AATACTAAT 90 | 361 | 433 PPDB 244933_at LDHC 4 0.720193 763.826000 710.571000 755.802000 482.228000 415.190000 452.131000 634.994000 427.622000 449.240000 340.969000 345.113000 777.589000 16.567268 69.579767
TAIR:ATCG01080 PLACE:S000185 | PLACE:S000111 | PLACE:S000081 | PLACE:S000111 | PLACE:S000477 SURE2STPAT21 | TATABOX4 | POLASIG2 | TATABOX4 | ANAERO1CONSENSUS AATACTAAT | TATATAA | AATTAAA | TATATAA | AAACAAA 52 | 176 | 198 | 212 | 278 TAIR9 244934_at LDHC 2 0.573531 180.873000 220.907000 99.716200 89.174800 115.830000 103.997000 101.110000 102.318000 109.159000 61.942500 122.730000 117.161000 16.715592 15.831596
TAIR:ATCG01090 PLACE:S000153 LTRECOREATCOR15 CCGAC 288 PPDB 244935_at LDHC 15 0.555940 6759.010000 6410.850000 7223.690000 6244.340000 6886.070000 6210.530000 6774.900000 6082.590000 6930.080000 7570.870000 7291.960000 7331.730000 3.797964 142.074582
TAIR:ATCG01100 PLACE:S000080 POLASIG1 AATAAA 452.5 TAIR9 244936_at LDHC 7 0.572267 2072.210000 2667.180000 2700.740000 1719.280000 2250.170000 2024.030000 1768.120000 1979.210000 2203.490000 2828.310000 2007.340000 2366.910000 2.970844 91.382492
TAIR:ATCG01110 PLACE:S000081 | PLACE:S000053 | PLACE:S000081 | PLACE:S000080 | PLACE:S000081 POLASIG2 | HEXMOTIFTAH3H4 | POLASIG2 | POLASIG1 | POLASIG2 AATTAAA | ACGTCA | AATTAAA | AATAAA | AATTAAA 30 | 110.5 | 381 | 456.5 | 522 TAIR9 244937_at LDHC 4 0.430022 82.849500 327.836000 94.781500 62.148700 140.967000 69.414400 88.190500 54.563700 127.498000 111.419000 116.974000 189.733000 15.056544 9.075028
TAIR:ATCG01120 PLACE:S000081 | PLACE:S000080 | PLACE:S000081 | PLACE:S000111 | PLACE:S000471 POLASIG2 | POLASIG1 | POLASIG2 | TATABOX4 | UP1ATMSD AATTAAA | AATAAA | AATTAAA | TATATAA | GGCCCAATT 11 | 86.5 | 152 | 212 | 349 TAIR9 244938_at LDHC 0 0.653948 293.341000 189.629000 219.796000 182.637000 212.687000 199.461000 218.110000 226.531000 240.290000 186.272000 173.288000 209.968000 19.859071 12.473987
TAIR:ATCG00065 PLACE:S000080 | PLACE:S000080 | PLACE:S000186 | PLACE:S000111 POLASIG1 | POLASIG1 | SURE1STPAT21 | TATABOX4 AATAAA | AATAAA | AATAGAAAA | TATATAA 5.5 | 100.5 | 351 | 546 TAIR9 244939_at LDHC 16 0.487262 206.224000 84.703700 195.717000 206.608000 131.072000 166.282000 235.985000 198.451000 246.647000 196.278000 183.130000 196.465000 10.610868 3.750514
TAIR:ATCG01230 PLACE:S000414 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 ABRELATERD1 | POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 ACGTG | AATAAA | AATAAA | AATAAA | AATAAA 90 | 331.5 | 351.5 | 373.5 | 473.5 TAIR9 244940_at LDHC 16 0.809248 2039.470000 1039.560000 2012.560000 1778.980000 1975.810000 2167.090000 1998.230000 1563.750000 1775.040000 1773.290000 1717.890000 1952.520000 12.328620 103.033949
TAIR:ATMG00010 PLACE:S000080 | PLACE:S000153 POLASIG1 | LTRECOREATCOR15 AATAAA | CCGAC 53.5 | 450 TAIR9 244941_at LDHC 21 0.641991 7.118530 6.158570 4.994780 6.707370 7.758350 6.320560 6.532460 6.795760 5.795150 5.744690 7.149970 5.637120 22.893515 0.235087
TAIR:ATMG00050 PLACE:S000483 | PLACE:S000474 | PLACE:S000081 | PLACE:S000080 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SITEIIATCYTC | POLASIG2 | POLASIG1 | SORLIP2AT | SITEIIATCYTC GGGCC | TGGGCC | AATTAAA | AATAAA | GGGCC | TGGGCT 248 | 248.5 | 287 | 411.5 | 435 | 478.5 TAIR9 244942_at LDHC 15 0.574902 3.447380 3.543250 3.595220 3.856370 4.284440 3.541320 3.478190 3.888330 3.724070 3.817800 3.691910 4.022640 8.484211 0.094096
TAIR:ATMG00070 PLACE:S000483 SORLIP2AT GGGCC 212 PPDB 244943_at LDHC 13 0.596907 7.919780 9.107270 6.157900 8.205980 6.704660 6.556470 7.800370 7.013700 6.065450 10.554600 8.798820 7.662720 8.303144 0.175413
TAIR:ATMG00110 PLACE:S000111 | PLACE:S000220 | PLACE:S000483 | PLACE:S000153 | PLACE:S000081 TATABOX4 | GRAZMRAB28 | SORLIP2AT | LTRECOREATCOR15 | POLASIG2 TATATAA | CATGCCGCC | GGGCC | CCGAC | AATTAAA 55 | 129 | 217 | 340 | 482 TAIR9 244945_at LDHC 0 0.667088 8.498770 5.796970 5.991360 5.012620 5.839300 6.549880 7.028040 7.477210 7.224910 6.578930 6.562600 6.777720 18.564449 0.372987
TAIR:ATMG00130 PLACE:S000080 POLASIG1 AATAAA 133.5 TAIR9 244947_at LDHC 16 0.412147 4.287680 4.266810 4.397800 4.639840 4.508310 4.551400 3.762420 4.327920 4.506530 3.640550 4.675780 3.973360 5.049203 0.061457
TAIR:ATMG00140 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 134 | 542.5 TAIR9 244948_at LDHC 16 0.765178 5.442890 4.766960 4.996810 5.238590 5.907360 4.923620 4.884460 5.093730 5.302550 4.321010 5.832120 4.728690 10.339953 0.098004
TAIR:ATMG00150 - - - - TAIR9 244949_at LDHC 14 0.477983 3.871730 4.141240 3.653850 4.270450 4.198000 3.610590 3.914060 3.408320 3.790290 3.744370 3.895390 4.090750 10.118376 0.065610
TAIR:ATMG00160 PLACE:S000111 | PLACE:S000483 | PLACE:S000414 | PLACE:S000080 | PLACE:S000167 TATABOX4 | SORLIP2AT | ABRELATERD1 | POLASIG1 | MYBPLANT TATATAA | GGGCC | ACGTG | AATAAA | CACCAACC 61 | 95 | 246 | 292.5 | 409.5 PPDB 244950_at LDHC 5 0.449203 10.861700 12.138200 9.113680 9.410090 8.880740 9.978690 8.266710 10.583300 10.874900 12.364700 9.141080 11.571100 23.326781 0.230064
TAIR:AT2G07723 PLACE:S000414 ABRELATERD1 ACGTG 147 TAIR9 244951_s_at LDHC 18 0.574717 38.074600 29.270100 24.171000 27.500200 25.597800 27.367500 24.045200 16.621800 21.744100 30.507900 22.815800 20.331700 15.007141 0.440283
TAIR:ATMG00260 PLACE:S000081 | PLACE:S000080 POLASIG2 | POLASIG1 AATTAAA | AATAAA 130 | 147.5 TAIR9 244952_at LDHC 14 0.537674 3.584610 3.395010 3.480510 3.760270 3.482440 3.485380 3.990850 3.749450 3.527460 3.987680 4.560210 3.123930 7.852555 0.077327
TAIR:ATMG00270 PLACE:S000474 | PLACE:S000507 SITEIIATCYTC | ABRERATCAL TGGGCT | CACGCGG 283.5 | 332 TAIR9 244953_s_at LDHC 17 0.746468 6.377530 5.054100 4.875930 4.863920 8.564170 5.510340 5.139220 5.512120 3.968390 5.006220 6.210100 6.850480 12.733607 0.567913
TAIR:AT2G07732 PLACE:S000440 CDA1ATCAB2 CAAAACGC 125.5 TAIR9 244954_s_at LDHC 8 0.552139 5.438810 5.349490 5.657950 5.558390 5.580580 5.297730 4.884470 5.700910 4.889320 5.582710 5.092520 4.497720 3.052456 0.116856
TAIR:ATMG00320 PLACE:S000385 | PLACE:S000474 EVENINGAT | SITEIIATCYTC AAAATATCT | TGGGCT 334 | 453.5 TAIR9 244955_at LDHC 21 0.460978 4.289060 4.002450 3.793030 3.830210 4.525580 3.893350 3.461220 4.207810 3.180730 3.623110 3.686720 3.454220 15.734353 0.048526
TAIR:AT2G07737 PLACE:S000472 UP2ATMSD AAACCCTA 17.5 TAIR9 244956_s_at LDHC 21 0.569960 4.706200 5.377980 4.499150 4.980460 6.134200 5.096000 5.430000 6.374370 4.294800 5.197750 5.292330 4.425200 15.622694 0.049695
TAIR:ATMG00400 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 277 TAIR9 244957_at LDHC 0 0.616806 6.550190 6.647040 7.253140 6.065520 7.583260 6.918290 5.909140 6.529390 7.686550 4.924400 7.609800 5.758450 4.823239 0.058625
TAIR:AT2G07703 PLACE:S000460 | PLACE:S000483 | PLACE:S000483 | PLACE:S000474 CTRMCAMV35S | SORLIP2AT | SORLIP2AT | SITEIIATCYTC TCTCTCTCT | GGGCC | GGGCC | TGGGCC 238 | 292 | 332 | 332.5 TAIR9 244958_at LDHC 16 0.689925 4.347940 4.892290 4.387230 4.334390 5.616780 4.536560 4.592330 3.904020 5.019020 4.050410 4.935510 4.379600 10.175254 0.102875
TAIR:ATMG00500 PLACE:S000153 LTRECOREATCOR15 CCGAC 31 TAIR9 244959_s_at LDHC 3 0.620079 12.511400 9.807490 12.159800 9.946940 10.834000 10.856300 13.552300 10.332700 13.489200 10.670000 7.534800 12.309600 20.392987 0.523694
TAIR:ATCG01020 PLACE:S000080 | PLACE:S000111 | PLACE:S000477 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 POLASIG1 | TATABOX4 | ANAERO1CONSENSUS | TATABOX4 | POLASIG1 | POLASIG1 AATAAA | TATATAA | AAACAAA | TATATAA | AATAAA | AATAAA 12.5 | 17 | 311 | 333 | 462.5 | 542.5 TAIR9 244960_at LDHC 8 0.444483 2342.630000 2022.400000 2687.090000 1925.100000 2699.430000 1981.270000 2175.760000 2207.920000 2411.230000 2826.040000 1756.240000 2191.610000 3.541441 84.191121
TAIR:ATCG01040 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000080 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | POLASIG1 AATAAA | TATAAAT | AAAAATCT | AATAAA 177.5 | 334 | 502.5 | 540.5 TAIR9 244961_at LDHC 20 0.713930 5374.720000 4203.190000 4780.930000 4413.910000 5365.330000 4796.940000 4707.520000 4686.590000 4173.650000 3745.560000 4621.130000 5138.850000 15.068297 215.969643
TAIR:ATCG01050 PLACE:S000080 | PLACE:S000149 POLASIG1 | CCA1ATLHCB1 AATAAA | AAAAATCT 19.5 | 458.5 TAIR9 244962_at LDHC 23 0.772577 3978.550000 3165.170000 3170.280000 2560.970000 3554.070000 3136.430000 3475.060000 2896.170000 2350.930000 1925.840000 2604.890000 3208.320000 17.101797 285.332451
TAIR:ATCG00570 PLACE:S000080 POLASIG1 AATAAA 454.5 TAIR9 244963_at LDHC 8 0.601880 4431.200000 6341.080000 4529.900000 4259.530000 5231.280000 3629.250000 4318.350000 4250.680000 6574.840000 6039.420000 6315.290000 5414.280000 4.839959 267.002999
TAIR:ATCG00580 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000477 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | ANAERO1CONSENSUS AATAAA | TATAAAT | AAAAATCT | AAACAAA 193.5 | 319 | 362.5 | 399 TAIR9 244964_at LDHC 7 0.573491 820.988000 1535.820000 798.753000 740.761000 763.589000 754.685000 819.156000 651.878000 1202.830000 1368.240000 1190.790000 1011.510000 3.278544 51.744746
TAIR:ATCG00590 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000063 | PLACE:S000080 | PLACE:S000149 POLASIG1 | POLASIG1 | POLASIG1 | MARABOX1 | POLASIG1 | CCA1ATLHCB1 AATAAA | AATAAA | AATAAA | AATAAATAAA | AATAAA | AAAAATCT 311.5 | 349.5 | 491.5 | 493.5 | 495.5 | 526.5 TAIR9 244965_at LDHC 8 0.326745 1546.230000 707.535000 1689.800000 975.267000 1227.700000 805.497000 862.730000 1216.150000 874.856000 995.936000 854.201000 1099.280000 12.252048 36.283371
TAIR:ATCG00600 - - - - TAIR9 244966_at LDHC 2 0.573109 8.754610 7.867140 6.736610 5.063990 5.626700 6.736710 7.316410 5.430830 6.388010 7.994240 5.947410 7.619290 17.638287 0.375885
TAIR:ATCG00630 PLACE:S000080 | PLACE:S000111 | PLACE:S000081 | PLACE:S000507 | PLACE:S000477 | PLACE:S000081 POLASIG1 | TATABOX4 | POLASIG2 | ABRERATCAL | ANAERO1CONSENSUS | POLASIG2 AATAAA | TATATAA | AATTAAA | AACGCGC | AAACAAA | AATTAAA 14.5 | 29 | 230 | 380 | 385 | 499 PPDB 244967_at LDHC 16 0.476738 5873.890000 5098.850000 6173.480000 5339.250000 6020.100000 5176.560000 5903.560000 5585.580000 5710.580000 5721.350000 5694.730000 6158.600000 11.339792 35.274866
TAIR:ATCG00640 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244968_at LDHC 14 0.583751 1957.440000 2249.250000 2029.590000 1892.700000 2889.090000 1890.760000 1455.190000 1594.890000 1567.520000 2295.250000 1989.710000 2376.700000 9.802600 146.653709
TAIR:ATCG00650 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244969_at LDHC 17 0.610157 1425.880000 1223.510000 1409.410000 1064.340000 2236.540000 1237.550000 824.610000 1016.040000 936.518000 1578.070000 1317.690000 1538.350000 1.927064 143.828385
TAIR:ATCG00660 PLACE:S000081 POLASIG2 AATTAAA 222 TAIR9 244970_at LDHC 5 0.539596 224.078000 164.719000 179.140000 146.455000 134.552000 95.829000 129.526000 189.156000 145.124000 133.755000 92.161100 218.040000 15.192413 14.803510
TAIR:ATCG00670 PLACE:S000080 | PLACE:S000404 POLASIG1 | CARGATCONSENSUS AATAAA | CCTTTTTAGG 15.5 | 319.5 TAIR9 244971_at LDHC 2 0.457003 1902.350000 1809.620000 1868.320000 1990.790000 1917.560000 1929.700000 1684.780000 1999.320000 1889.850000 1203.380000 1397.300000 1750.820000 20.631677 64.902051
TAIR:ATCG00680 PLACE:S000404 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000298 CARGATCONSENSUS | POLASIG1 | POLASIG1 | POLASIG1 | PYRIMIDINEBOXHVEPB1 CCTAAAAAGG | AATAAA | AATAAA | AATAAA | TTTTTTCC 9.5 | 222.5 | 247.5 | 259.5 | 323.5 PPDB 244972_at LDHC 4 0.650758 1053.470000 1724.080000 890.055000 847.048000 547.327000 659.147000 803.432000 666.587000 730.102000 403.826000 559.486000 745.006000 14.751388 144.016621
TAIR:ATCG00690 PLACE:S000483 | PLACE:S000153 SORLIP2AT | LTRECOREATCOR15 GGGCC | CCGAC 331 | 461 PPDB 244973_at LDHC 6 0.283018 392.939000 537.376000 542.102000 371.493000 403.932000 363.252000 277.199000 222.860000 241.649000 274.755000 195.684000 303.157000 12.714009 20.415823
TAIR:ATCG00700 PLACE:S000109 | PLACE:S000153 TATABOX2 | LTRECOREATCOR15 TATAAAT | CCGAC 198 | 459 TAIR9 244974_at LDHC 13 0.543067 27.439300 26.538900 41.818900 24.404900 36.431600 35.065100 28.359100 39.699800 40.023900 39.888800 35.423400 39.544900 6.357358 1.248782
TAIR:ATCG00710 PLACE:S000477 | PLACE:S000477 ANAERO1CONSENSUS | ANAERO1CONSENSUS AAACAAA | AAACAAA 399 | 410 PPDB 244975_at LDHC 5 0.541902 2277.770000 3479.900000 2902.090000 2444.910000 2783.230000 2257.770000 2273.730000 2375.390000 2553.050000 2536.730000 2171.490000 2687.080000 0.725794 103.686207
TAIR:ATCG00720 - - - - PPDB 244976_at LDHC 6 0.652990 6268.680000 6746.660000 6357.950000 6364.160000 6535.370000 5616.760000 6711.870000 6509.240000 6165.280000 5674.720000 5605.030000 6140.150000 14.293937 164.611733
TAIR:ATCG00730 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 AATAAA | AATAAA | AATAAA | AATAAA 127.5 | 265.5 | 278.5 | 327.5 PPDB 244977_at LDHC 23 0.768968 21.157000 12.841500 13.242700 6.737180 9.153080 8.550320 14.577800 7.982620 9.643360 7.668610 8.844490 13.350400 18.562630 1.874432
TAIR:ATCG00740 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 POLASIG1 | POLASIG1 | POLASIG2 AATAAA | AATAAA | AATTAAA 36.5 | 338.5 | 358 PPDB 244978_at LDHC 7 0.648319 1010.070000 2819.910000 1368.540000 1320.680000 1055.300000 875.948000 724.230000 949.493000 2138.660000 1961.650000 1442.460000 1889.580000 2.423208 180.398500
TAIR:ATCG00750 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244979_at LDHC 6 0.548181 423.759000 2565.690000 399.846000 452.245000 334.825000 351.123000 449.189000 545.562000 2201.140000 1939.640000 1071.340000 1566.090000 1.732218 191.786513
TAIR:ATCG00760 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244980_at LDHC 7 0.410768 365.723000 823.842000 413.473000 366.050000 460.349000 376.258000 428.197000 411.891000 1170.510000 774.782000 582.284000 876.965000 2.833445 51.279692
TAIR:ATCG00770 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244981_at LDHC 6 0.442831 384.558000 683.491000 339.947000 284.496000 363.997000 297.134000 235.897000 262.343000 633.080000 336.103000 336.347000 542.513000 12.644698 27.736721
TAIR:ATCG00780 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244982_at LDHC 2 0.585481 444.912000 257.062000 301.356000 203.845000 205.585000 291.011000 247.016000 202.891000 384.964000 234.240000 219.974000 409.961000 17.765690 23.240879
TAIR:ATCG00790 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 | PLACE:S000414 POLASIG1 | POLASIG1 | POLASIG2 | ABRELATERD1 AATAAA | AATAAA | AATTAAA | ACGTG 162.5 | 326.5 | 360 | 540 PPDB 244983_at LDHC 21 0.503731 1466.270000 674.962000 1094.210000 948.667000 1166.120000 1217.220000 871.107000 1190.490000 1294.880000 837.338000 868.180000 1445.230000 15.840499 59.571834
TAIR:ATCG00800 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244984_at LDHC 2 0.666192 2246.970000 2815.790000 2444.260000 2028.050000 2041.270000 2439.820000 1829.770000 2116.220000 2568.010000 1666.480000 1806.880000 2847.340000 20.228177 105.993549
TAIR:ATCG00810 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244985_at LDHC 1 0.583128 1626.580000 2552.440000 1517.040000 1372.500000 1631.490000 1816.460000 1374.870000 1562.480000 2122.100000 996.749000 1428.330000 2576.830000 18.641681 129.897458
TAIR:ATCG00820 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244986_at LDHC 8 0.371646 2913.410000 2353.710000 2300.230000 2023.660000 2437.510000 2346.260000 1509.960000 1669.140000 2723.080000 2052.190000 1328.670000 1955.600000 12.515993 71.238740
TAIR:ATCG01310 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244987_s_at LDHC 2 0.603667 3907.990000 3619.410000 3092.720000 3318.370000 2959.340000 3393.780000 3070.270000 2752.820000 3665.700000 2122.900000 2382.550000 3175.090000 19.890466 185.357289
TAIR:ATCG00840 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244988_s_at LDHC 16 0.409478 2753.010000 2258.820000 2493.330000 2144.430000 2674.530000 1849.340000 2348.750000 1587.620000 2339.090000 1981.600000 1892.000000 2811.940000 15.207626 59.338451
TAIR:ATCG01280 - - - - TAIR9 244989_s_at LDHC 1 0.761857 9.941800 9.058050 7.491360 6.562330 9.379060 7.977040 10.750300 9.184850 8.737880 7.720480 8.814950 7.057340 18.697104 0.494572
TAIR:ATCG01270 PLACE:S000111 TATABOX4 TATATAA 294 TAIR9 244990_s_at LDHC 8 0.814799 35.148000 28.854700 41.319100 25.945300 29.391200 30.806800 22.900100 26.181000 46.036100 36.060200 23.292900 21.793700 2.140060 3.161225
* Row count is limited to 100.