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DIURNAL gene expression + PLACE promoter motif

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the various sizes of motifs predicted by PLACE (Plant Cis-acting Regulatory DNA Elements) database. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE):
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_PLACE_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PLACE_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PLACE_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PLACE_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PLACE_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PLACE_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PLACE_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://www.dna.affrc.go.jp/PLACE/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PLACE_LIGHT5_HIF138_13
#download_from http://linkdata.org/work/rdf1s746i
#namespace ATTED http://atted.jp/data/locus/
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif name motif sequence motif position Origin of baseline sequence Probe Condition Phase Correlation label:LIGHT5_HIF138-13_0_hours label:LIGHT5_HIF138-13_4_hours label:LIGHT5_HIF138-13_8_hours label:LIGHT5_HIF138-13_12_hours label:LIGHT5_HIF138-13_16_hours label:LIGHT5_HIF138-13_20_hours label:LIGHT5_HIF138-13_24_hours label:LIGHT5_HIF138-13_28_hours label:LIGHT5_HIF138-13_32_hours label:LIGHT5_HIF138-13_36_hours label:LIGHT5_HIF138-13_40_hours label:LIGHT5_HIF138-13_44_hours Sine Phase Sine Amplitude
#object_type_xsd string string string string string string string string string string string string string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
TAIR:ATMG00640 PLACE:S000483 SORLIP2AT GGGCC 79 PPDB 244901_at LIGHT5_HIF138-13 18 0.971999 7.000000 7.000000 7.000000 7.000000 8.000000 8.000000 7.165850 6.910230 7.266290 6.814680 8.092710 8.240160 12.261558 0.300663
TAIR:ATMG00650 PLACE:S000394 | PLACE:S000414 | PLACE:S000483 | PLACE:S000153 ACGTABREMOTIFA2OSEM | ABRELATERD1 | SORLIP2AT | LTRECOREATCOR15 ACGTGTC | ACGTG | GGGCC | CCGAC 77 | 78 | 101 | 159 TAIR9 244902_at LIGHT5_HIF138-13 13 0.837765 4.000000 5.000000 5.000000 5.000000 6.000000 5.000000 4.053270 4.943200 4.902680 5.224700 5.504470 5.210240 8.002930 0.269384
TAIR:ATMG00660 PLACE:S000483 | PLACE:S000474 | PLACE:S000474 | PLACE:S000167 | PLACE:S000507 SORLIP2AT | SITEIIATCYTC | SITEIIATCYTC | MYBPLANT | ABRERATCAL GGGCC | TGGGCC | TGGGCT | AACCAACC | AACGCGG 212 | 212.5 | 217.5 | 303.5 | 531 TAIR9 244903_at LIGHT5_HIF138-13 1 0.800721 7.000000 6.000000 5.000000 5.000000 6.000000 4.000000 7.370670 5.991310 4.622570 5.348660 5.847120 3.747910 19.931988 0.300717
TAIR:ATMG00670 PLACE:S000477 | PLACE:S000111 | PLACE:S000111 | PLACE:S000477 ANAERO1CONSENSUS | TATABOX4 | TATABOX4 | ANAERO1CONSENSUS AAACAAA | TATATAA | TATATAA | AAACAAA 98 | 155 | 212 | 398 TAIR9 244904_at LIGHT5_HIF138-13 1 0.716116 9.000000 7.000000 4.000000 8.000000 4.000000 6.000000 9.737460 6.727950 3.627430 8.141980 3.683530 5.519840 18.922773 0.649176
TAIR:ATMG00680 PLACE:S000153 LTRECOREATCOR15 CCGAC 478 TAIR9 244905_at LIGHT5_HIF138-13 4 0.932491 5.000000 5.000000 5.000000 5.000000 4.000000 5.000000 5.041720 4.588850 5.193440 4.909040 4.071010 5.091110 21.938613 0.136296
TAIR:ATMG00690 PLACE:S000080 | PLACE:S000200 POLASIG1 | HBOXCONSENSUSPVCHS AATAAA | CCTACCTTAGAATCT 343.5 | 540 TAIR9 244906_at LIGHT5_HIF138-13 19 0.895468 5.000000 5.000000 4.000000 5.000000 6.000000 6.000000 5.088090 5.087350 3.666930 4.813550 6.591580 6.259490 12.807330 0.523823
TAIR:ATMG00710 - - - - TAIR9 244907_at LIGHT5_HIF138-13 20 0.782519 8.000000 8.000000 6.000000 9.000000 7.000000 9.000000 7.994570 7.971710 6.316630 8.831980 7.311370 8.139470 13.809608 0.256482
TAIR:ATMG00720 - - - - TAIR9 244908_at LIGHT5_HIF138-13 0 0.923858 6.000000 6.000000 5.000000 5.000000 5.000000 7.000000 6.341730 6.194280 4.538590 5.251040 4.726980 6.318410 17.180150 0.444726
TAIR:ATMG00740 PLACE:S000477 | PLACE:S000507 | PLACE:S000477 ANAERO1CONSENSUS | ABRERATCAL | ANAERO1CONSENSUS AAACAAA | AACGTGG | AAACAAA 72 | 103 | 126 TAIR9 244909_at LIGHT5_HIF138-13 4 0.956237 4.000000 4.000000 4.000000 3.000000 3.000000 3.000000 4.267090 3.640750 4.067810 2.867300 2.883300 3.214380 21.536958 0.326065
TAIR:ATMG00750 PLACE:S000507 | PLACE:S000474 ABRERATCAL | SITEIIATCYTC CACGCGG | TGGGCT 332 | 361.5 TAIR9 244910_s_at LIGHT5_HIF138-13 12 0.910506 5.000000 5.000000 5.000000 6.000000 5.000000 5.000000 5.184810 4.762940 5.062550 5.681030 4.795060 4.658900 6.708751 0.145337
TAIR:AT2G07783 PLACE:S000149 CCA1ATLHCB1 AACAATCT 317.5 TAIR9 244912_at LIGHT5_HIF138-13 8 0.783964 232.000000 174.000000 297.000000 222.000000 194.000000 104.000000 251.087000 170.712000 323.129000 221.377000 205.907000 99.789300 2.138800 30.760907
TAIR:ATMG00840 PLACE:S000426 UPRMOTIFIIAT CCCAGAGTAGCCAACCACG 107 TAIR9 244913_at LIGHT5_HIF138-13 15 0.883944 5.000000 5.000000 4.000000 5.000000 6.000000 5.000000 4.920510 4.629980 4.385450 5.205360 6.509790 4.587920 10.824666 0.309132
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244914_at LIGHT5_HIF138-13 4 0.673118 15.000000 13.000000 7.000000 13.000000 6.000000 11.000000 16.390800 13.174900 7.502890 14.066600 5.575150 11.616800 16.686174 1.388055
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244915_s_at LIGHT5_HIF138-13 20 0.845930 5.000000 6.000000 4.000000 6.000000 6.000000 6.000000 4.940750 6.132730 3.815820 5.616880 5.641170 6.592590 23.034994 0.319397
TAIR:ATMG00880 PLACE:S000474 SITEIIATCYTC TGGGCT 409.5 TAIR9 244916_at LIGHT5_HIF138-13 4 0.924660 6.000000 8.000000 5.000000 6.000000 5.000000 6.000000 5.623730 8.254820 5.235960 6.099540 5.262630 5.856990 14.756250 0.420189
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244917_at LIGHT5_HIF138-13 19 0.718237 6.000000 5.000000 4.000000 6.000000 5.000000 5.000000 6.504130 5.041010 4.100840 6.151690 4.941750 4.694070 14.854284 0.146979
TAIR:ATMG00960 PLACE:S000507 ABRERATCAL AACGCGG 301 TAIR9 244919_at LIGHT5_HIF138-13 3 0.850821 6.000000 7.000000 5.000000 6.000000 5.000000 5.000000 5.445640 7.215950 4.769880 6.082010 4.671910 5.144410 22.214246 0.337079
TAIR:ATMG00990 PLACE:S000483 | PLACE:S000483 | PLACE:S000071 | PLACE:S000483 | PLACE:S000474 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SORLIP2AT | NONAMERMOTIFTAH3H4 | SORLIP2AT | SITEIIATCYTC | SORLIP2AT | SITEIIATCYTC GGGCC | GGGCC | CATCCAACG | GGGCC | TGGGCC | GGGCC | TGGGCC 93 | 176 | 230 | 402 | 402.5 | 450 | 450.5 TAIR9 244920_s_at LIGHT5_HIF138-13 12 0.881824 76.000000 79.000000 98.000000 89.000000 98.000000 86.000000 73.995600 82.615500 101.837000 92.172500 92.892200 80.740400 5.797569 5.204269
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244921_s_at LIGHT5_HIF138-13 4 0.817763 45.000000 46.000000 53.000000 27.000000 41.000000 29.000000 40.914100 44.173500 52.071900 25.859900 39.292000 31.281900 22.784259 4.154221
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244922_s_at LIGHT5_HIF138-13 5 0.814518 10.000000 10.000000 7.000000 10.000000 5.000000 8.000000 10.056600 9.665040 6.884310 10.387800 5.028730 8.181280 14.770734 0.707880
TAIR:ATMG01020 PLACE:S000477 | PLACE:S000111 ANAERO1CONSENSUS | TATABOX4 AAACAAA | TATATAA 95 | 159 TAIR9 244923_s_at LIGHT5_HIF138-13 4 0.946516 5.000000 6.000000 5.000000 5.000000 5.000000 5.000000 4.564340 6.349720 4.922330 5.143970 4.790390 5.032220 22.693929 0.187635
TAIR:ATMG01040 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 376 TAIR9 244924_at LIGHT5_HIF138-13 2 0.849375 7.000000 7.000000 5.000000 6.000000 5.000000 6.000000 6.784590 6.906830 4.622410 5.528430 5.423040 6.130180 17.390473 0.443294
TAIR:ATMG00510 PLACE:S000477 | PLACE:S000111 | PLACE:S000081 | PLACE:S000186 ANAERO1CONSENSUS | TATABOX4 | POLASIG2 | SURE1STPAT21 AAACAAA | TATATAA | AATTAAA | AATAGAAAA 151 | 293 | 408 | 414 TAIR9 244925_at LIGHT5_HIF138-13 1 0.975305 33.000000 16.000000 13.000000 13.000000 10.000000 13.000000 31.011900 15.710700 12.010500 13.891300 10.300700 13.216400 18.766782 3.693210
TAIR:ATMG00520 PLACE:S000153 | PLACE:S000426 | PLACE:S000080 LTRECOREATCOR15 | UPRMOTIFIIAT | POLASIG1 CCGAC | CCTTTCACCTCTTCCCACG | AATAAA 179 | 357 | 516.5 TAIR9 244926_s_at LIGHT5_HIF138-13 12 0.588696 5.000000 5.000000 5.000000 5.000000 5.000000 5.000000 4.736950 4.932270 4.820350 5.308180 4.731400 4.639570 8.033108 0.054274
TAIR:ATMG00530 PLACE:S000483 | PLACE:S000474 | PLACE:S000414 SORLIP2AT | SITEIIATCYTC | ABRELATERD1 GGGCC | TGGGCC | ACGTG 172 | 172.5 | 458 TAIR9 244927_at LIGHT5_HIF138-13 2 0.865380 7.000000 7.000000 5.000000 6.000000 5.000000 6.000000 6.351950 7.642210 4.839870 5.444270 4.983030 5.620000 19.728855 0.475119
TAIR:ATMG00570 PLACE:S000111 | PLACE:S000153 TATABOX4 | LTRECOREATCOR15 TATATAA | CCGAC 184 | 549 TAIR9 244928_s_at LIGHT5_HIF138-13 19 0.827146 6.000000 7.000000 7.000000 6.000000 7.000000 8.000000 6.360670 6.861970 6.307630 5.808310 7.365600 7.857220 14.052375 0.256490
TAIR:AT2G07717 PLACE:S000167 | PLACE:S000192 | PLACE:S000080 | PLACE:S000109 MYBPLANT | ACIPVPAL2 | POLASIG1 | TATABOX2 CACCTACC | CCCACCTACC | AATAAA | TATAAAT 33.5 | 34.5 | 125.5 | 129 TAIR9 244929_at LIGHT5_HIF138-13 5 0.808325 115.000000 128.000000 130.000000 126.000000 96.000000 123.000000 117.779000 119.119000 118.235000 137.532000 103.125000 112.273000 0.938449 4.535312
TAIR:AT2G07809 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 17 | 207.5 TAIR9 244930_at LIGHT5_HIF138-13 4 0.688910 4.000000 5.000000 4.000000 4.000000 4.000000 5.000000 3.844870 5.027780 3.966840 4.359420 3.717030 4.606060 16.552466 0.130997
TAIR:ATMG00630 PLACE:S000483 | PLACE:S000483 SORLIP2AT | SORLIP2AT GGGCC | GGGCC 387 | 428 TAIR9 244931_at LIGHT5_HIF138-13 21 0.901585 6.000000 5.000000 4.000000 5.000000 5.000000 6.000000 5.908340 5.186010 4.331540 5.197790 4.956670 6.564370 15.244309 0.437460
TAIR:ATCG01060 PLACE:S000149 CCA1ATLHCB1 AAAAATCT 80.5 TAIR9 244932_at LIGHT5_HIF138-13 0 0.794148 2949.000000 2598.000000 2348.000000 2578.000000 2059.000000 2397.000000 2723.300000 2554.240000 2554.180000 2430.220000 2161.390000 2216.670000 21.132928 120.435032
TAIR:ATCG01070 PLACE:S000483 | PLACE:S000477 | PLACE:S000185 SORLIP2AT | ANAERO1CONSENSUS | SURE2STPAT21 GGGCC | AAACAAA | AATACTAAT 90 | 361 | 433 PPDB 244933_at LIGHT5_HIF138-13 4 0.722098 800.000000 594.000000 779.000000 574.000000 602.000000 661.000000 783.287000 626.387000 754.547000 557.509000 557.496000 598.958000 20.665491 37.567425
TAIR:ATCG01080 PLACE:S000185 | PLACE:S000111 | PLACE:S000081 | PLACE:S000111 | PLACE:S000477 SURE2STPAT21 | TATABOX4 | POLASIG2 | TATABOX4 | ANAERO1CONSENSUS AATACTAAT | TATATAA | AATTAAA | TATATAA | AAACAAA 52 | 176 | 198 | 212 | 278 TAIR9 244934_at LIGHT5_HIF138-13 2 0.812933 150.000000 140.000000 171.000000 114.000000 120.000000 147.000000 138.834000 151.412000 184.842000 120.963000 116.592000 149.365000 22.166222 9.299971
TAIR:ATCG01090 PLACE:S000153 LTRECOREATCOR15 CCGAC 288 PPDB 244935_at LIGHT5_HIF138-13 9 0.674845 9668.000000 7994.000000 9942.000000 8928.000000 9869.000000 8424.000000 9199.400000 8122.580000 10678.900000 9510.690000 9089.690000 8793.030000 5.317637 228.154208
TAIR:ATCG01100 PLACE:S000080 POLASIG1 AATAAA 452.5 TAIR9 244936_at LIGHT5_HIF138-13 9 0.724692 4476.000000 3548.000000 4801.000000 4245.000000 4247.000000 3543.000000 4353.890000 3261.890000 5055.110000 3964.900000 3887.900000 3256.740000 3.088691 180.956258
TAIR:ATCG01110 PLACE:S000081 | PLACE:S000053 | PLACE:S000081 | PLACE:S000080 | PLACE:S000081 POLASIG2 | HEXMOTIFTAH3H4 | POLASIG2 | POLASIG1 | POLASIG2 AATTAAA | ACGTCA | AATTAAA | AATAAA | AATTAAA 30 | 110.5 | 381 | 456.5 | 522 TAIR9 244937_at LIGHT5_HIF138-13 12 0.641447 268.000000 102.000000 343.000000 193.000000 305.000000 86.000000 273.650000 102.394000 350.216000 182.630000 303.947000 79.825800 7.301829 26.521440
TAIR:ATCG01120 PLACE:S000081 | PLACE:S000080 | PLACE:S000081 | PLACE:S000111 | PLACE:S000471 POLASIG2 | POLASIG1 | POLASIG2 | TATABOX4 | UP1ATMSD AATTAAA | AATAAA | AATTAAA | TATATAA | GGCCCAATT 11 | 86.5 | 152 | 212 | 349 TAIR9 244938_at LIGHT5_HIF138-13 8 0.743615 538.000000 372.000000 442.000000 427.000000 477.000000 304.000000 510.918000 379.008000 463.175000 418.301000 513.735000 310.836000 3.632358 6.287723
TAIR:ATCG00065 PLACE:S000080 | PLACE:S000080 | PLACE:S000186 | PLACE:S000111 POLASIG1 | POLASIG1 | SURE1STPAT21 | TATABOX4 AATAAA | AATAAA | AATAGAAAA | TATATAA 5.5 | 100.5 | 351 | 546 TAIR9 244939_at LIGHT5_HIF138-13 8 0.821694 695.000000 502.000000 1202.000000 714.000000 938.000000 557.000000 754.984000 510.346000 1241.550000 740.765000 917.743000 539.771000 4.558581 98.592768
TAIR:ATCG01230 PLACE:S000414 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 ABRELATERD1 | POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 ACGTG | AATAAA | AATAAA | AATAAA | AATAAA 90 | 331.5 | 351.5 | 373.5 | 473.5 TAIR9 244940_at LIGHT5_HIF138-13 8 0.796792 4488.000000 3815.000000 5660.000000 4278.000000 5135.000000 4047.000000 4806.410000 3662.020000 6049.980000 3948.650000 4759.410000 3733.960000 3.875183 206.603949
TAIR:ATMG00010 PLACE:S000080 | PLACE:S000153 POLASIG1 | LTRECOREATCOR15 AATAAA | CCGAC 53.5 | 450 TAIR9 244941_at LIGHT5_HIF138-13 4 0.496849 4.000000 4.000000 4.000000 4.000000 4.000000 4.000000 3.977180 4.367830 3.732360 4.175560 3.940780 4.106170 17.143026 0.017270
TAIR:ATMG00050 PLACE:S000483 | PLACE:S000474 | PLACE:S000081 | PLACE:S000080 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SITEIIATCYTC | POLASIG2 | POLASIG1 | SORLIP2AT | SITEIIATCYTC GGGCC | TGGGCC | AATTAAA | AATAAA | GGGCC | TGGGCT 248 | 248.5 | 287 | 411.5 | 435 | 478.5 TAIR9 244942_at LIGHT5_HIF138-13 1 0.932231 8.000000 5.000000 4.000000 5.000000 4.000000 5.000000 8.172480 5.492880 4.006980 5.098350 3.631460 5.055800 18.314445 0.713186
TAIR:ATMG00070 PLACE:S000483 SORLIP2AT GGGCC 212 PPDB 244943_at LIGHT5_HIF138-13 18 0.818822 7.000000 7.000000 7.000000 6.000000 8.000000 8.000000 6.886130 6.618400 7.186460 5.790170 7.634760 8.003100 14.067984 0.322784
TAIR:ATMG00110 PLACE:S000111 | PLACE:S000220 | PLACE:S000483 | PLACE:S000153 | PLACE:S000081 TATABOX4 | GRAZMRAB28 | SORLIP2AT | LTRECOREATCOR15 | POLASIG2 TATATAA | CATGCCGCC | GGGCC | CCGAC | AATTAAA 55 | 129 | 217 | 340 | 482 TAIR9 244945_at LIGHT5_HIF138-13 4 0.964600 4.000000 5.000000 4.000000 4.000000 4.000000 4.000000 3.951420 5.459450 3.775940 3.848370 3.896480 4.150230 14.644333 0.205192
TAIR:ATMG00130 PLACE:S000080 POLASIG1 AATAAA 133.5 TAIR9 244947_at LIGHT5_HIF138-13 1 0.605828 6.000000 6.000000 5.000000 6.000000 5.000000 5.000000 6.564770 5.481900 4.521650 6.293450 5.384490 5.369000 18.658503 0.105201
TAIR:ATMG00140 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 134 | 542.5 TAIR9 244948_at LIGHT5_HIF138-13 23 0.753549 7.000000 6.000000 4.000000 6.000000 5.000000 6.000000 7.269740 5.538000 4.362020 6.056920 4.644720 5.805090 16.975001 0.421847
TAIR:ATMG00150 - - - - TAIR9 244949_at LIGHT5_HIF138-13 15 0.924790 5.000000 5.000000 4.000000 5.000000 7.000000 4.000000 4.572760 4.786550 4.176340 5.233980 7.191900 3.618410 9.111527 0.381695
TAIR:ATMG00160 PLACE:S000111 | PLACE:S000483 | PLACE:S000414 | PLACE:S000080 | PLACE:S000167 TATABOX4 | SORLIP2AT | ABRELATERD1 | POLASIG1 | MYBPLANT TATATAA | GGGCC | ACGTG | AATAAA | CACCAACC 61 | 95 | 246 | 292.5 | 409.5 PPDB 244950_at LIGHT5_HIF138-13 22 0.854576 8.000000 6.000000 5.000000 7.000000 5.000000 8.000000 8.784900 6.229870 5.050210 7.016980 4.789170 8.493990 16.288063 0.666692
TAIR:AT2G07723 PLACE:S000414 ABRELATERD1 ACGTG 147 TAIR9 244951_s_at LIGHT5_HIF138-13 22 0.678363 12.000000 18.000000 12.000000 11.000000 19.000000 14.000000 12.686000 18.973800 11.341800 10.414400 20.012400 13.904900 21.439007 0.608063
TAIR:ATMG00260 PLACE:S000081 | PLACE:S000080 POLASIG2 | POLASIG1 AATTAAA | AATAAA 130 | 147.5 TAIR9 244952_at LIGHT5_HIF138-13 3 0.923425 5.000000 6.000000 5.000000 5.000000 5.000000 5.000000 5.279600 6.532400 4.736710 4.546570 4.533240 4.975480 21.031066 0.279467
TAIR:ATMG00270 PLACE:S000474 | PLACE:S000507 SITEIIATCYTC | ABRERATCAL TGGGCT | CACGCGG 283.5 | 332 TAIR9 244953_s_at LIGHT5_HIF138-13 5 0.662880 5.000000 7.000000 6.000000 5.000000 6.000000 7.000000 4.949970 7.489440 6.012350 5.346830 5.492700 6.767020 16.098153 0.187692
TAIR:AT2G07732 PLACE:S000440 CDA1ATCAB2 CAAAACGC 125.5 TAIR9 244954_s_at LIGHT5_HIF138-13 4 0.868355 7.000000 6.000000 7.000000 7.000000 5.000000 7.000000 6.374690 6.051850 6.979300 6.813110 5.085640 6.925400 22.900965 0.152039
TAIR:ATMG00320 PLACE:S000385 | PLACE:S000474 EVENINGAT | SITEIIATCYTC AAAATATCT | TGGGCT 334 | 453.5 TAIR9 244955_at LIGHT5_HIF138-13 9 0.763693 5.000000 6.000000 5.000000 5.000000 5.000000 4.000000 4.940830 6.292130 4.920570 4.676390 5.349800 3.645290 12.102424 0.304489
TAIR:AT2G07737 PLACE:S000472 UP2ATMSD AAACCCTA 17.5 TAIR9 244956_s_at LIGHT5_HIF138-13 22 0.727182 9.000000 6.000000 4.000000 8.000000 5.000000 8.000000 8.371930 6.318370 4.071930 7.246930 4.987390 7.700490 15.809868 0.704775
TAIR:ATMG00400 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 277 TAIR9 244957_at LIGHT5_HIF138-13 2 0.709376 9.000000 8.000000 5.000000 8.000000 5.000000 7.000000 8.169390 8.699580 5.170860 7.558150 5.114610 7.320940 19.120834 0.607532
TAIR:AT2G07703 PLACE:S000460 | PLACE:S000483 | PLACE:S000483 | PLACE:S000474 CTRMCAMV35S | SORLIP2AT | SORLIP2AT | SITEIIATCYTC TCTCTCTCT | GGGCC | GGGCC | TGGGCC 238 | 292 | 332 | 332.5 TAIR9 244958_at LIGHT5_HIF138-13 4 0.602676 5.000000 6.000000 5.000000 6.000000 5.000000 6.000000 4.817710 6.598160 5.027730 6.016140 5.286380 5.785320 1.255895 0.042259
TAIR:ATMG00500 PLACE:S000153 LTRECOREATCOR15 CCGAC 31 TAIR9 244959_s_at LIGHT5_HIF138-13 3 0.924920 9.000000 14.000000 7.000000 7.000000 9.000000 7.000000 9.104210 12.914100 7.547210 7.402500 9.595330 6.616580 21.152261 0.908529
TAIR:ATCG01020 PLACE:S000080 | PLACE:S000111 | PLACE:S000477 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 POLASIG1 | TATABOX4 | ANAERO1CONSENSUS | TATABOX4 | POLASIG1 | POLASIG1 AATAAA | TATATAA | AAACAAA | TATATAA | AATAAA | AATAAA 12.5 | 17 | 311 | 333 | 462.5 | 542.5 TAIR9 244960_at LIGHT5_HIF138-13 9 0.824482 2638.000000 2199.000000 2793.000000 2417.000000 2292.000000 2066.000000 2425.180000 2100.100000 2999.230000 2335.170000 2138.860000 2257.140000 10.472806 104.777068
TAIR:ATCG01040 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000080 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | POLASIG1 AATAAA | TATAAAT | AAAAATCT | AATAAA 177.5 | 334 | 502.5 | 540.5 TAIR9 244961_at LIGHT5_HIF138-13 6 0.740675 5963.000000 5832.000000 5450.000000 5407.000000 5026.000000 5271.000000 6021.270000 5560.020000 5266.800000 5832.930000 5287.110000 4813.230000 14.208991 147.501140
TAIR:ATCG01050 PLACE:S000080 | PLACE:S000149 POLASIG1 | CCA1ATLHCB1 AATAAA | AAAAATCT 19.5 | 458.5 TAIR9 244962_at LIGHT5_HIF138-13 10 0.656793 5596.000000 5268.000000 5917.000000 5654.000000 5107.000000 5394.000000 6074.170000 4796.050000 6118.940000 6149.420000 5581.360000 5239.350000 3.970249 110.843067
TAIR:ATCG00570 PLACE:S000080 POLASIG1 AATAAA 454.5 TAIR9 244963_at LIGHT5_HIF138-13 11 0.693070 5792.000000 6302.000000 6244.000000 6354.000000 6545.000000 6263.000000 5920.440000 6724.160000 6154.170000 6423.150000 7071.560000 6428.390000 8.149329 119.538613
TAIR:ATCG00580 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000477 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | ANAERO1CONSENSUS AATAAA | TATAAAT | AAAAATCT | AAACAAA 193.5 | 319 | 362.5 | 399 TAIR9 244964_at LIGHT5_HIF138-13 7 0.682398 2649.000000 2843.000000 3107.000000 2843.000000 2951.000000 2750.000000 2899.350000 2950.750000 3319.320000 2566.350000 3156.440000 2632.800000 2.699239 69.255085
TAIR:ATCG00590 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000063 | PLACE:S000080 | PLACE:S000149 POLASIG1 | POLASIG1 | POLASIG1 | MARABOX1 | POLASIG1 | CCA1ATLHCB1 AATAAA | AATAAA | AATAAA | AATAAATAAA | AATAAA | AAAAATCT 311.5 | 349.5 | 491.5 | 493.5 | 495.5 | 526.5 TAIR9 244965_at LIGHT5_HIF138-13 5 0.872359 1439.000000 1396.000000 1433.000000 1624.000000 1186.000000 1369.000000 1535.390000 1494.880000 1485.090000 1665.780000 1121.430000 1360.220000 0.667575 56.599608
TAIR:ATCG00600 - - - - TAIR9 244966_at LIGHT5_HIF138-13 7 0.926113 36.000000 56.000000 75.000000 50.000000 42.000000 44.000000 39.183300 59.206200 68.912200 50.249900 40.938600 43.975500 1.718952 7.069444
TAIR:ATCG00630 PLACE:S000080 | PLACE:S000111 | PLACE:S000081 | PLACE:S000507 | PLACE:S000477 | PLACE:S000081 POLASIG1 | TATABOX4 | POLASIG2 | ABRERATCAL | ANAERO1CONSENSUS | POLASIG2 AATAAA | TATATAA | AATTAAA | AACGCGC | AAACAAA | AATTAAA 14.5 | 29 | 230 | 380 | 385 | 499 PPDB 244967_at LIGHT5_HIF138-13 5 0.670310 9091.000000 10260.000000 9258.000000 9215.000000 9025.000000 9976.000000 9065.340000 10694.800000 9939.880000 9031.690000 8764.470000 10419.000000 15.387496 224.801552
TAIR:ATCG00640 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244968_at LIGHT5_HIF138-13 12 0.692847 2856.000000 1998.000000 2766.000000 2533.000000 2989.000000 1727.000000 2612.140000 1890.290000 2614.590000 2755.630000 2995.180000 1810.780000 6.465424 150.267455
TAIR:ATCG00650 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244969_at LIGHT5_HIF138-13 7 0.865939 1653.000000 1346.000000 1701.000000 1653.000000 1407.000000 1074.000000 1715.780000 1407.180000 1768.480000 1684.100000 1484.630000 1041.050000 2.277753 106.060693
TAIR:ATCG00660 PLACE:S000081 POLASIG2 AATTAAA 222 TAIR9 244970_at LIGHT5_HIF138-13 9 0.904663 201.000000 154.000000 301.000000 227.000000 178.000000 209.000000 209.787000 164.932000 296.953000 223.429000 167.643000 221.648000 3.219887 15.252101
TAIR:ATCG00670 PLACE:S000080 | PLACE:S000404 POLASIG1 | CARGATCONSENSUS AATAAA | CCTTTTTAGG 15.5 | 319.5 TAIR9 244971_at LIGHT5_HIF138-13 7 0.780331 3208.000000 2794.000000 3383.000000 3174.000000 3015.000000 2576.000000 3488.440000 2880.830000 3577.950000 3476.140000 2866.810000 2399.630000 2.285437 155.323473
TAIR:ATCG00680 PLACE:S000404 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000298 CARGATCONSENSUS | POLASIG1 | POLASIG1 | POLASIG1 | PYRIMIDINEBOXHVEPB1 CCTAAAAAGG | AATAAA | AATAAA | AATAAA | TTTTTTCC 9.5 | 222.5 | 247.5 | 259.5 | 323.5 PPDB 244972_at LIGHT5_HIF138-13 8 0.823728 2921.000000 2212.000000 3247.000000 2257.000000 2455.000000 1107.000000 2745.260000 1995.240000 3258.010000 2448.420000 2575.410000 1216.920000 1.861600 274.270433
TAIR:ATCG00690 PLACE:S000483 | PLACE:S000153 SORLIP2AT | LTRECOREATCOR15 GGGCC | CCGAC 331 | 461 PPDB 244973_at LIGHT5_HIF138-13 9 0.879237 776.000000 541.000000 1028.000000 732.000000 628.000000 455.000000 746.870000 533.373000 1107.490000 793.363000 669.518000 498.654000 2.689019 90.765191
TAIR:ATCG00700 PLACE:S000109 | PLACE:S000153 TATABOX2 | LTRECOREATCOR15 TATAAAT | CCGAC 198 | 459 TAIR9 244974_at LIGHT5_HIF138-13 4 0.918755 126.000000 107.000000 117.000000 90.000000 91.000000 84.000000 118.859000 107.644000 108.634000 86.787400 93.876500 85.085800 21.587620 7.718052
TAIR:ATCG00710 PLACE:S000477 | PLACE:S000477 ANAERO1CONSENSUS | ANAERO1CONSENSUS AAACAAA | AAACAAA 399 | 410 PPDB 244975_at LIGHT5_HIF138-13 9 0.853261 3496.000000 3467.000000 4305.000000 3810.000000 3652.000000 3125.000000 3237.970000 3794.470000 4282.300000 3535.560000 3729.410000 3335.420000 2.996633 204.652163
TAIR:ATCG00720 - - - - PPDB 244976_at LIGHT5_HIF138-13 9 0.786328 8668.000000 8771.000000 10045.000000 8904.000000 8884.000000 8323.000000 9230.570000 8021.050000 9898.270000 9499.450000 9148.080000 7934.050000 3.632135 303.874721
TAIR:ATCG00730 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 AATAAA | AATAAA | AATAAA | AATAAA 127.5 | 265.5 | 278.5 | 327.5 PPDB 244977_at LIGHT5_HIF138-13 8 0.746368 8.000000 9.000000 12.000000 7.000000 10.000000 10.000000 8.021300 9.114460 13.027600 6.740410 10.804100 9.977930 2.523959 0.215727
TAIR:ATCG00740 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 POLASIG1 | POLASIG1 | POLASIG2 AATAAA | AATAAA | AATTAAA 36.5 | 338.5 | 358 PPDB 244978_at LIGHT5_HIF138-13 7 0.740555 3793.000000 3202.000000 4305.000000 3730.000000 3400.000000 2729.000000 4096.770000 3240.330000 4552.840000 3526.510000 3716.540000 2555.400000 2.046393 243.326697
TAIR:ATCG00750 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244979_at LIGHT5_HIF138-13 12 0.773733 2763.000000 1387.000000 3235.000000 2573.000000 2835.000000 1221.000000 2569.240000 1345.500000 3531.290000 2772.660000 3075.660000 1225.510000 5.018454 324.176844
TAIR:ATCG00760 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244980_at LIGHT5_HIF138-13 9 0.674709 2207.000000 932.000000 2585.000000 1934.000000 1932.000000 738.000000 2044.940000 922.879000 2688.570000 1795.700000 1871.420000 755.686000 3.726270 235.705178
TAIR:ATCG00770 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244981_at LIGHT5_HIF138-13 12 0.774370 706.000000 260.000000 881.000000 697.000000 765.000000 269.000000 679.085000 258.803000 960.628000 664.316000 828.530000 281.131000 5.386809 97.870312
TAIR:ATCG00780 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244982_at LIGHT5_HIF138-13 8 0.703401 887.000000 328.000000 1187.000000 695.000000 868.000000 276.000000 856.342000 351.433000 1235.210000 647.151000 849.089000 303.011000 3.741817 104.306145
TAIR:ATCG00790 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 | PLACE:S000414 POLASIG1 | POLASIG1 | POLASIG2 | ABRELATERD1 AATAAA | AATAAA | AATTAAA | ACGTG 162.5 | 326.5 | 360 | 540 PPDB 244983_at LIGHT5_HIF138-13 8 0.674807 1639.000000 1050.000000 2010.000000 1445.000000 1569.000000 798.000000 1777.030000 964.848000 1818.780000 1447.940000 1431.540000 844.275000 3.041909 123.924567
TAIR:ATCG00800 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244984_at LIGHT5_HIF138-13 8 0.686248 3278.000000 1672.000000 3289.000000 2755.000000 2758.000000 1414.000000 3526.430000 1792.090000 3472.150000 2805.140000 2933.350000 1412.190000 3.410720 196.516312
TAIR:ATCG00810 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244985_at LIGHT5_HIF138-13 12 0.689682 1682.000000 618.000000 2088.000000 1403.000000 1796.000000 578.000000 1716.620000 644.104000 2075.370000 1453.970000 1703.910000 544.709000 7.222599 184.151369
TAIR:ATCG00820 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244986_at LIGHT5_HIF138-13 8 0.735775 2671.000000 1951.000000 3009.000000 2450.000000 2557.000000 2001.000000 2549.990000 2085.410000 3029.710000 2318.550000 2582.260000 2040.400000 3.652578 111.954157
TAIR:ATCG01310 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244987_s_at LIGHT5_HIF138-13 15 0.679742 7389.000000 5719.000000 7326.000000 6651.000000 7839.000000 5306.000000 6743.750000 5217.080000 6856.070000 6775.890000 8306.640000 5358.320000 4.544743 328.360088
TAIR:ATCG00840 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244988_s_at LIGHT5_HIF138-13 8 0.710294 6203.000000 3782.000000 5770.000000 5023.000000 5611.000000 3363.000000 5818.940000 3934.240000 5967.780000 5254.380000 5268.720000 3307.160000 3.678748 240.671877
TAIR:ATCG01280 - - - - TAIR9 244989_s_at LIGHT5_HIF138-13 7 0.881860 7.000000 7.000000 7.000000 6.000000 6.000000 5.000000 6.924760 6.444420 6.805380 6.128450 5.528040 4.832920 12.571125 0.429786
TAIR:ATCG01270 PLACE:S000111 TATABOX4 TATATAA 294 TAIR9 244990_s_at LIGHT5_HIF138-13 4 0.944557 23.000000 20.000000 21.000000 14.000000 15.000000 14.000000 21.948100 18.595100 19.563100 13.893500 14.996300 14.349200 21.318108 1.967353
* Row count is limited to 100.