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DIURNAL gene expression + PLACE promoter motif

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the various sizes of motifs predicted by PLACE (Plant Cis-acting Regulatory DNA Elements) database. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE):
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_PLACE_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PLACE_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PLACE_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PLACE_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PLACE_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PLACE_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PLACE_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://www.dna.affrc.go.jp/PLACE/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PLACE_LLHC
#download_from http://linkdata.org/work/rdf1s746i
#namespace ATTED http://atted.jp/data/locus/
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif name motif sequence motif position Origin of baseline sequence Probe Condition Phase Correlation label:LLHC_0_hours label:LLHC_4_hours label:LLHC_8_hours label:LLHC_12_hours label:LLHC_16_hours label:LLHC_20_hours label:LLHC_24_hours label:LLHC_28_hours label:LLHC_32_hours label:LLHC_36_hours label:LLHC_40_hours label:LLHC_44_hours Sine Phase Sine Amplitude
#object_type_xsd string string string string string string string string string string string string string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
TAIR:ATMG00640 PLACE:S000483 SORLIP2AT GGGCC 79 PPDB 244901_at LLHC 10 0.726522 6.957800 6.257610 6.893240 7.736280 6.463150 5.959940 6.497590 5.966820 7.140260 6.897810 6.777230 6.455650 5.213409 0.212458
TAIR:ATMG00650 PLACE:S000394 | PLACE:S000414 | PLACE:S000483 | PLACE:S000153 ACGTABREMOTIFA2OSEM | ABRELATERD1 | SORLIP2AT | LTRECOREATCOR15 ACGTGTC | ACGTG | GGGCC | CCGAC 77 | 78 | 101 | 159 TAIR9 244902_at LLHC 15 0.748941 4.713570 4.911740 5.333510 5.339680 5.053710 5.369760 4.592140 4.807460 4.439340 4.654330 5.945190 6.413790 11.569138 0.238983
TAIR:ATMG00660 PLACE:S000483 | PLACE:S000474 | PLACE:S000474 | PLACE:S000167 | PLACE:S000507 SORLIP2AT | SITEIIATCYTC | SITEIIATCYTC | MYBPLANT | ABRERATCAL GGGCC | TGGGCC | TGGGCT | AACCAACC | AACGCGG 212 | 212.5 | 217.5 | 303.5 | 531 TAIR9 244903_at LLHC 17 0.757439 6.613940 6.419770 6.151570 7.064920 8.636590 8.468080 5.428010 5.517830 6.480230 6.689440 6.560050 7.694790 10.999549 0.507337
TAIR:ATMG00670 PLACE:S000477 | PLACE:S000111 | PLACE:S000111 | PLACE:S000477 ANAERO1CONSENSUS | TATABOX4 | TATABOX4 | ANAERO1CONSENSUS AAACAAA | TATATAA | TATATAA | AAACAAA 98 | 155 | 212 | 398 TAIR9 244904_at LLHC 10 0.408171 6.460340 6.403170 5.538140 7.172140 6.068280 4.783160 5.990700 5.271850 6.657870 5.955260 6.524920 7.108590 7.495788 0.116086
TAIR:ATMG00680 PLACE:S000153 LTRECOREATCOR15 CCGAC 478 TAIR9 244905_at LLHC 12 0.357095 5.413800 4.870240 4.161510 5.670040 4.142250 4.295760 4.180840 4.192760 4.792930 4.439520 4.741910 5.019510 8.182936 0.024282
TAIR:ATMG00690 PLACE:S000080 | PLACE:S000200 POLASIG1 | HBOXCONSENSUSPVCHS AATAAA | CCTACCTTAGAATCT 343.5 | 540 TAIR9 244906_at LLHC 8 0.630322 4.252580 3.870090 4.060460 5.083670 4.403150 3.096610 4.567090 5.580360 4.861560 5.074630 5.378850 4.170040 4.254743 0.216555
TAIR:ATMG00710 - - - - TAIR9 244907_at LLHC 13 0.338114 5.052810 5.861040 4.270500 6.639320 5.235480 5.314380 5.575590 4.650800 6.083200 4.925290 5.801170 4.911220 7.014749 0.109048
TAIR:ATMG00720 - - - - TAIR9 244908_at LLHC 11 0.528996 4.117080 4.174500 4.413370 4.912420 4.285870 3.767540 4.122630 4.032000 4.552280 4.303880 4.098680 5.054510 6.100169 0.094817
TAIR:ATMG00740 PLACE:S000477 | PLACE:S000507 | PLACE:S000477 ANAERO1CONSENSUS | ABRERATCAL | ANAERO1CONSENSUS AAACAAA | AACGTGG | AAACAAA 72 | 103 | 126 TAIR9 244909_at LLHC 10 0.763808 3.459490 3.599550 3.729290 4.102150 4.201870 3.303370 3.150620 4.343820 3.601550 4.053330 4.197920 3.572800 6.002893 0.166743
TAIR:ATMG00750 PLACE:S000507 | PLACE:S000474 ABRERATCAL | SITEIIATCYTC CACGCGG | TGGGCT 332 | 361.5 TAIR9 244910_s_at LLHC 8 0.639585 3.799090 3.655510 3.987860 3.516220 3.981020 3.570610 3.471150 3.136070 4.416370 3.922550 3.800670 3.856690 6.037844 0.096009
TAIR:AT2G07783 PLACE:S000149 CCA1ATLHCB1 AACAATCT 317.5 TAIR9 244912_at LLHC 15 0.584385 60.348500 41.600000 55.151200 54.033600 67.170000 49.458300 18.030200 49.803800 40.361900 67.408800 44.767000 52.675800 4.321332 4.606000
TAIR:ATMG00840 PLACE:S000426 UPRMOTIFIIAT CCCAGAGTAGCCAACCACG 107 TAIR9 244913_at LLHC 14 0.492005 3.707920 3.499960 3.660850 4.092720 3.766670 3.865740 3.247370 3.249970 4.178090 3.107700 3.686400 3.668920 7.650854 0.068722
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244914_at LLHC 12 0.642386 6.602250 5.406000 5.840540 8.780330 5.966560 5.880330 5.578210 5.928890 7.787220 5.476200 6.038290 5.691240 7.282845 0.303555
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244915_s_at LLHC 11 0.577182 3.557130 3.513690 3.837350 4.115300 3.627360 3.672290 3.586530 4.206920 4.021820 3.911440 4.035040 4.008720 5.183546 0.080418
TAIR:ATMG00880 PLACE:S000474 SITEIIATCYTC TGGGCT 409.5 TAIR9 244916_at LLHC 9 0.677272 2.878160 2.795090 3.002800 3.165030 2.563620 2.595150 2.259990 2.673440 3.311880 3.050120 2.900450 3.276680 4.890711 0.112737
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244917_at LLHC 11 0.397865 3.592580 3.365290 3.271580 3.733520 3.558290 3.587230 4.222220 3.974210 4.903130 3.531750 3.485780 3.718460 12.973529 0.086842
TAIR:ATMG00960 PLACE:S000507 ABRERATCAL AACGCGG 301 TAIR9 244919_at LLHC 11 0.859203 2.821430 2.860130 3.480150 3.471610 2.955170 3.077640 2.795550 3.169030 3.052000 3.989830 2.721950 2.765900 4.391934 0.183775
TAIR:ATMG00990 PLACE:S000483 | PLACE:S000483 | PLACE:S000071 | PLACE:S000483 | PLACE:S000474 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SORLIP2AT | NONAMERMOTIFTAH3H4 | SORLIP2AT | SITEIIATCYTC | SORLIP2AT | SITEIIATCYTC GGGCC | GGGCC | CATCCAACG | GGGCC | TGGGCC | GGGCC | TGGGCC 93 | 176 | 230 | 402 | 402.5 | 450 | 450.5 TAIR9 244920_s_at LLHC 8 0.731269 34.677700 37.779500 31.693700 38.753200 37.743200 19.152900 23.379300 30.111800 30.170200 34.071700 45.091600 24.950600 5.701181 2.601277
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244921_s_at LLHC 17 0.679652 24.884600 18.148600 20.453200 21.819300 27.231900 20.835500 20.795900 22.566200 18.631800 26.077500 23.614700 23.031900 10.617304 1.150926
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244922_s_at LLHC 12 0.584202 7.008700 5.987780 6.952700 7.623370 6.142820 5.653890 5.197070 4.988180 6.166750 5.818180 6.448140 7.414480 8.214104 0.206061
TAIR:ATMG01020 PLACE:S000477 | PLACE:S000111 ANAERO1CONSENSUS | TATABOX4 AAACAAA | TATATAA 95 | 159 TAIR9 244923_s_at LLHC 18 0.514305 6.280920 5.662440 5.632770 4.649910 5.918450 5.799100 6.156940 5.092010 7.058370 6.701080 7.215330 5.687770 2.314065 0.103162
TAIR:ATMG01040 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 376 TAIR9 244924_at LLHC 15 0.582203 4.976480 5.457980 4.581670 5.146460 6.272090 4.491210 4.746270 4.273340 5.726270 5.318030 4.684330 4.876680 5.486248 0.153412
TAIR:ATMG00510 PLACE:S000477 | PLACE:S000111 | PLACE:S000081 | PLACE:S000186 ANAERO1CONSENSUS | TATABOX4 | POLASIG2 | SURE1STPAT21 AAACAAA | TATATAA | AATTAAA | AATAGAAAA 151 | 293 | 408 | 414 TAIR9 244925_at LLHC 8 0.594134 11.320200 12.027700 12.042000 12.665800 11.405800 11.138000 14.090300 11.432900 11.874500 11.947100 13.048900 10.161900 2.376528 0.144095
TAIR:ATMG00520 PLACE:S000153 | PLACE:S000426 | PLACE:S000080 LTRECOREATCOR15 | UPRMOTIFIIAT | POLASIG1 CCGAC | CCTTTCACCTCTTCCCACG | AATAAA 179 | 357 | 516.5 TAIR9 244926_s_at LLHC 7 0.470542 3.284330 3.351210 3.198600 3.728720 3.148030 3.005300 3.577830 3.812360 3.677100 3.354800 3.480150 4.416220 18.108045 0.026614
TAIR:ATMG00530 PLACE:S000483 | PLACE:S000474 | PLACE:S000414 SORLIP2AT | SITEIIATCYTC | ABRELATERD1 GGGCC | TGGGCC | ACGTG 172 | 172.5 | 458 TAIR9 244927_at LLHC 12 0.588396 5.326530 5.786530 5.822440 6.514310 5.878220 5.714600 4.343860 5.183500 5.350280 5.679990 4.696370 5.172150 6.896082 0.211559
TAIR:ATMG00570 PLACE:S000111 | PLACE:S000153 TATABOX4 | LTRECOREATCOR15 TATATAA | CCGAC 184 | 549 TAIR9 244928_s_at LLHC 11 0.476608 6.356650 5.932700 6.979640 6.088540 6.451660 5.190030 4.944590 5.097430 5.128320 7.127340 4.485110 6.162080 4.791230 0.196936
TAIR:AT2G07717 PLACE:S000167 | PLACE:S000192 | PLACE:S000080 | PLACE:S000109 MYBPLANT | ACIPVPAL2 | POLASIG1 | TATABOX2 CACCTACC | CCCACCTACC | AATAAA | TATAAAT 33.5 | 34.5 | 125.5 | 129 TAIR9 244929_at LLHC 11 0.687186 85.932700 74.141400 80.824700 95.749600 99.573700 45.218400 48.215500 84.168500 61.694900 105.817000 114.705000 102.509000 7.981519 8.904808
TAIR:AT2G07809 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 17 | 207.5 TAIR9 244930_at LLHC 2 0.289374 3.334080 3.452030 3.212720 3.234170 3.267780 3.410430 3.508980 3.483150 3.570130 3.529810 3.534090 3.555260 18.683483 0.020084
TAIR:ATMG00630 PLACE:S000483 | PLACE:S000483 SORLIP2AT | SORLIP2AT GGGCC | GGGCC 387 | 428 TAIR9 244931_at LLHC 13 0.689175 5.679630 4.797840 5.978930 5.714580 6.067410 5.240570 4.700600 5.359700 6.587370 5.347710 5.545640 5.554450 6.452921 0.192641
TAIR:ATCG01060 PLACE:S000149 CCA1ATLHCB1 AAAAATCT 80.5 TAIR9 244932_at LLHC 12 0.839618 422.221000 469.699000 544.221000 837.298000 580.760000 372.926000 244.397000 455.304000 265.917000 645.958000 819.069000 620.819000 8.043375 93.209395
TAIR:ATCG01070 PLACE:S000483 | PLACE:S000477 | PLACE:S000185 SORLIP2AT | ANAERO1CONSENSUS | SURE2STPAT21 GGGCC | AAACAAA | AATACTAAT 90 | 361 | 433 PPDB 244933_at LLHC 12 0.622601 400.238000 450.527000 454.438000 453.294000 510.472000 322.092000 230.079000 297.270000 251.373000 342.877000 401.779000 434.900000 8.667208 24.206270
TAIR:ATCG01080 PLACE:S000185 | PLACE:S000111 | PLACE:S000081 | PLACE:S000111 | PLACE:S000477 SURE2STPAT21 | TATABOX4 | POLASIG2 | TATABOX4 | ANAERO1CONSENSUS AATACTAAT | TATATAA | AATTAAA | TATATAA | AAACAAA 52 | 176 | 198 | 212 | 278 TAIR9 244934_at LLHC 12 0.543034 88.023800 121.672000 124.320000 113.182000 70.081800 103.320000 33.060000 81.526600 66.877800 90.846300 90.024300 120.490000 6.758700 3.833042
TAIR:ATCG01090 PLACE:S000153 LTRECOREATCOR15 CCGAC 288 PPDB 244935_at LLHC 6 0.408777 5312.740000 6472.330000 5617.090000 4811.020000 5293.550000 5836.510000 5247.790000 5499.020000 5933.150000 6076.740000 6377.540000 5540.750000 2.183158 40.607091
TAIR:ATCG01100 PLACE:S000080 POLASIG1 AATAAA 452.5 TAIR9 244936_at LLHC 6 0.548422 1585.070000 2160.150000 1972.340000 1630.500000 1680.690000 1863.980000 1338.620000 1656.870000 1638.780000 1761.890000 1454.710000 1534.860000 1.121371 67.395132
TAIR:ATCG01110 PLACE:S000081 | PLACE:S000053 | PLACE:S000081 | PLACE:S000080 | PLACE:S000081 POLASIG2 | HEXMOTIFTAH3H4 | POLASIG2 | POLASIG1 | POLASIG2 AATTAAA | ACGTCA | AATTAAA | AATAAA | AATTAAA 30 | 110.5 | 381 | 456.5 | 522 TAIR9 244937_at LLHC 12 0.557911 57.108600 74.997800 73.687600 64.243700 45.125600 100.368000 47.542500 99.614400 81.206400 77.645700 80.244000 77.141700 11.783377 1.924725
TAIR:ATCG01120 PLACE:S000081 | PLACE:S000080 | PLACE:S000081 | PLACE:S000111 | PLACE:S000471 POLASIG2 | POLASIG1 | POLASIG2 | TATABOX4 | UP1ATMSD AATTAAA | AATAAA | AATTAAA | TATATAA | GGCCCAATT 11 | 86.5 | 152 | 212 | 349 TAIR9 244938_at LLHC 6 0.566963 145.116000 144.256000 196.230000 111.069000 170.620000 145.664000 178.283000 207.671000 182.814000 154.754000 149.052000 163.479000 13.577013 8.048758
TAIR:ATCG00065 PLACE:S000080 | PLACE:S000080 | PLACE:S000186 | PLACE:S000111 POLASIG1 | POLASIG1 | SURE1STPAT21 | TATABOX4 AATAAA | AATAAA | AATAGAAAA | TATATAA 5.5 | 100.5 | 351 | 546 TAIR9 244939_at LLHC 11 0.733958 102.552000 97.514300 114.937000 175.546000 107.943000 94.325900 66.214900 130.234000 107.130000 209.284000 205.029000 176.859000 7.761663 21.785898
TAIR:ATCG01230 PLACE:S000414 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 ABRELATERD1 | POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 ACGTG | AATAAA | AATAAA | AATAAA | AATAAA 90 | 331.5 | 351.5 | 373.5 | 473.5 TAIR9 244940_at LLHC 13 0.809443 1179.080000 1050.180000 1357.850000 1719.900000 1456.350000 1091.800000 623.202000 1394.070000 1047.210000 1807.580000 1556.720000 1225.750000 6.764997 174.603601
TAIR:ATMG00010 PLACE:S000080 | PLACE:S000153 POLASIG1 | LTRECOREATCOR15 AATAAA | CCGAC 53.5 | 450 TAIR9 244941_at LLHC 16 0.692969 6.264120 5.703760 5.764110 5.415700 7.497600 6.081850 6.208480 5.473530 6.739610 6.545520 5.955220 5.325450 3.266520 0.129700
TAIR:ATMG00050 PLACE:S000483 | PLACE:S000474 | PLACE:S000081 | PLACE:S000080 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SITEIIATCYTC | POLASIG2 | POLASIG1 | SORLIP2AT | SITEIIATCYTC GGGCC | TGGGCC | AATTAAA | AATAAA | GGGCC | TGGGCT 248 | 248.5 | 287 | 411.5 | 435 | 478.5 TAIR9 244942_at LLHC 18 0.494045 3.730800 3.294390 3.388280 3.881090 3.955260 3.715610 3.504580 3.170770 3.044020 3.173240 3.328190 3.055400 11.776332 0.083643
TAIR:ATMG00070 PLACE:S000483 SORLIP2AT GGGCC 212 PPDB 244943_at LLHC 13 0.639208 7.548900 6.527660 7.472170 8.832010 8.012280 6.537030 6.985160 6.518420 6.840620 7.353380 6.670890 7.045270 7.031945 0.245152
TAIR:ATMG00110 PLACE:S000111 | PLACE:S000220 | PLACE:S000483 | PLACE:S000153 | PLACE:S000081 TATABOX4 | GRAZMRAB28 | SORLIP2AT | LTRECOREATCOR15 | POLASIG2 TATATAA | CATGCCGCC | GGGCC | CCGAC | AATTAAA 55 | 129 | 217 | 340 | 482 TAIR9 244945_at LLHC 18 0.456840 6.737620 7.038450 6.829550 5.063160 7.475960 6.632090 4.792150 5.760190 4.624580 5.719580 5.978690 6.651600 14.118919 0.211026
TAIR:ATMG00130 PLACE:S000080 POLASIG1 AATAAA 133.5 TAIR9 244947_at LLHC 10 0.671126 3.642230 4.030790 4.530830 5.014040 4.389220 4.221750 4.190020 3.232360 4.678590 4.068450 3.650850 3.818650 5.421058 0.187416
TAIR:ATMG00140 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 134 | 542.5 TAIR9 244948_at LLHC 6 0.498970 5.360470 4.692100 4.590760 5.661660 4.936870 4.684860 5.255030 4.894700 5.362600 4.884550 4.430270 4.801070 0.349483 0.049795
TAIR:ATMG00150 - - - - TAIR9 244949_at LLHC 16 0.651237 3.751300 3.389330 3.385710 4.383140 4.257270 3.495850 3.537910 3.158150 3.350260 3.054460 3.812140 3.756940 10.650805 0.156815
TAIR:ATMG00160 PLACE:S000111 | PLACE:S000483 | PLACE:S000414 | PLACE:S000080 | PLACE:S000167 TATABOX4 | SORLIP2AT | ABRELATERD1 | POLASIG1 | MYBPLANT TATATAA | GGGCC | ACGTG | AATAAA | CACCAACC 61 | 95 | 246 | 292.5 | 409.5 PPDB 244950_at LLHC 23 0.588530 12.182600 7.033480 8.822960 9.142060 7.869040 9.629350 8.777720 9.563400 7.525080 9.645100 7.995830 8.809460 16.788417 0.314396
TAIR:AT2G07723 PLACE:S000414 ABRELATERD1 ACGTG 147 TAIR9 244951_s_at LLHC 12 0.776862 14.186700 15.274500 17.046700 25.763900 18.342900 15.210600 19.693100 20.746200 26.016700 23.468500 23.180500 13.113600 4.837800 2.224994
TAIR:ATMG00260 PLACE:S000081 | PLACE:S000080 POLASIG2 | POLASIG1 AATTAAA | AATAAA 130 | 147.5 TAIR9 244952_at LLHC 11 0.394443 3.455230 3.001120 3.315390 3.810210 3.082260 3.171890 3.333180 3.679140 3.751310 3.582510 3.662820 3.840260 6.051161 0.055338
TAIR:ATMG00270 PLACE:S000474 | PLACE:S000507 SITEIIATCYTC | ABRERATCAL TGGGCT | CACGCGG 283.5 | 332 TAIR9 244953_s_at LLHC 14 0.380674 4.762710 3.998260 5.232060 4.274440 5.002140 4.285790 4.126410 4.716760 4.696260 4.619760 4.390900 5.507470 9.253444 0.052077
TAIR:AT2G07732 PLACE:S000440 CDA1ATCAB2 CAAAACGC 125.5 TAIR9 244954_s_at LLHC 8 0.585559 4.939030 5.472390 6.706870 5.773730 4.645600 4.714450 5.793020 5.099110 5.544550 4.849150 6.007910 4.739880 1.966744 0.225134
TAIR:ATMG00320 PLACE:S000385 | PLACE:S000474 EVENINGAT | SITEIIATCYTC AAAATATCT | TGGGCT 334 | 453.5 TAIR9 244955_at LLHC 8 0.717593 4.049110 3.745710 3.466450 3.723890 3.718280 3.415270 3.977260 3.891130 3.909520 3.924420 3.903690 3.436890 12.989212 0.040217
TAIR:AT2G07737 PLACE:S000472 UP2ATMSD AAACCCTA 17.5 TAIR9 244956_s_at LLHC 5 0.562310 4.891620 5.214790 4.623430 5.280270 4.508030 4.104250 4.935090 4.732760 4.440430 4.400330 3.806430 5.119210 14.616405 0.137313
TAIR:ATMG00400 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 277 TAIR9 244957_at LLHC 12 0.409496 5.007400 4.891380 4.635800 5.609250 5.841200 4.482220 5.697800 4.951990 6.742200 4.460540 5.313370 5.217510 7.353403 0.076353
TAIR:AT2G07703 PLACE:S000460 | PLACE:S000483 | PLACE:S000483 | PLACE:S000474 CTRMCAMV35S | SORLIP2AT | SORLIP2AT | SITEIIATCYTC TCTCTCTCT | GGGCC | GGGCC | TGGGCC 238 | 292 | 332 | 332.5 TAIR9 244958_at LLHC 4 0.612695 4.759400 4.272490 4.411090 3.846940 4.223290 4.296180 4.237280 3.981780 4.491860 3.767620 4.126890 3.650320 15.263638 0.094576
TAIR:ATMG00500 PLACE:S000153 LTRECOREATCOR15 CCGAC 31 TAIR9 244959_s_at LLHC 14 0.781016 11.988500 8.233370 10.550200 14.828100 14.197100 11.147300 9.355260 13.911900 10.665100 16.155800 12.537800 9.146610 6.958302 1.066355
TAIR:ATCG01020 PLACE:S000080 | PLACE:S000111 | PLACE:S000477 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 POLASIG1 | TATABOX4 | ANAERO1CONSENSUS | TATABOX4 | POLASIG1 | POLASIG1 AATAAA | TATATAA | AAACAAA | TATATAA | AATAAA | AATAAA 12.5 | 17 | 311 | 333 | 462.5 | 542.5 TAIR9 244960_at LLHC 8 0.673246 1426.550000 1499.410000 1606.590000 1308.120000 1477.540000 975.892000 1537.020000 1446.740000 2260.760000 1658.360000 1748.320000 1278.750000 2.628396 124.540534
TAIR:ATCG01040 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000080 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | POLASIG1 AATAAA | TATAAAT | AAAAATCT | AATAAA 177.5 | 334 | 502.5 | 540.5 TAIR9 244961_at LLHC 10 0.757889 4784.740000 5106.050000 5023.120000 4961.600000 5454.040000 4348.550000 4470.150000 4746.310000 5569.270000 4970.300000 5577.470000 4561.470000 5.221211 179.362628
TAIR:ATCG01050 PLACE:S000080 | PLACE:S000149 POLASIG1 | CCA1ATLHCB1 AATAAA | AAAAATCT 19.5 | 458.5 TAIR9 244962_at LLHC 10 0.861183 2656.590000 2554.710000 3050.760000 3210.560000 2969.560000 1843.760000 1504.330000 2367.240000 2363.410000 3127.300000 3133.630000 2442.700000 6.053150 277.644795
TAIR:ATCG00570 PLACE:S000080 POLASIG1 AATAAA 454.5 TAIR9 244963_at LLHC 11 0.729823 4376.600000 4939.090000 5830.820000 5676.490000 5014.930000 5183.930000 4246.720000 4549.680000 5014.900000 4725.150000 5276.610000 4669.310000 5.765777 223.415315
TAIR:ATCG00580 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000477 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | ANAERO1CONSENSUS AATAAA | TATAAAT | AAAAATCT | AAACAAA 193.5 | 319 | 362.5 | 399 TAIR9 244964_at LLHC 9 0.558711 856.884000 1254.440000 1402.090000 1293.210000 1015.980000 1280.450000 980.247000 1093.210000 1117.320000 956.234000 988.027000 865.748000 9.698231 62.795031
TAIR:ATCG00590 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000063 | PLACE:S000080 | PLACE:S000149 POLASIG1 | POLASIG1 | POLASIG1 | MARABOX1 | POLASIG1 | CCA1ATLHCB1 AATAAA | AATAAA | AATAAA | AATAAATAAA | AATAAA | AAAAATCT 311.5 | 349.5 | 491.5 | 493.5 | 495.5 | 526.5 TAIR9 244965_at LLHC 7 0.644117 1237.010000 1407.630000 1587.550000 1206.430000 1339.820000 1167.160000 1092.280000 1211.960000 1315.960000 843.786000 882.288000 815.380000 12.057970 95.162036
TAIR:ATCG00600 - - - - TAIR9 244966_at LLHC 19 0.757994 15.256100 8.674050 7.377480 11.285400 17.753600 17.156500 3.490840 8.635750 4.801960 7.577850 11.435400 18.059500 12.682656 2.560613
TAIR:ATCG00630 PLACE:S000080 | PLACE:S000111 | PLACE:S000081 | PLACE:S000507 | PLACE:S000477 | PLACE:S000081 POLASIG1 | TATABOX4 | POLASIG2 | ABRERATCAL | ANAERO1CONSENSUS | POLASIG2 AATAAA | TATATAA | AATTAAA | AACGCGC | AAACAAA | AATTAAA 14.5 | 29 | 230 | 380 | 385 | 499 PPDB 244967_at LLHC 9 0.729109 3386.900000 3252.890000 4019.110000 3902.970000 3218.780000 2905.400000 3240.430000 3871.890000 3385.450000 4271.620000 4246.100000 3294.450000 4.807348 203.126749
TAIR:ATCG00640 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244968_at LLHC 8 0.213220 1791.290000 1856.740000 1840.030000 1795.120000 1767.760000 2113.600000 1387.700000 1347.480000 1665.980000 1319.160000 1383.210000 1254.080000 12.507402 13.948979
TAIR:ATCG00650 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244969_at LLHC 6 0.874814 829.355000 1038.320000 874.216000 719.780000 807.881000 729.820000 815.115000 950.982000 1018.180000 700.649000 760.022000 691.401000 23.036837 66.519534
TAIR:ATCG00660 PLACE:S000081 POLASIG2 AATTAAA 222 TAIR9 244970_at LLHC 9 0.294666 245.181000 192.417000 260.751000 190.427000 219.408000 110.646000 131.255000 193.358000 150.249000 174.884000 133.154000 224.657000 11.591843 7.904989
TAIR:ATCG00670 PLACE:S000080 | PLACE:S000404 POLASIG1 | CARGATCONSENSUS AATAAA | CCTTTTTAGG 15.5 | 319.5 TAIR9 244971_at LLHC 9 0.687853 2221.530000 2585.150000 2568.640000 2520.950000 2308.250000 2256.880000 1857.620000 2217.180000 2257.950000 2318.310000 2230.830000 2380.550000 4.103240 68.532692
TAIR:ATCG00680 PLACE:S000404 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000298 CARGATCONSENSUS | POLASIG1 | POLASIG1 | POLASIG1 | PYRIMIDINEBOXHVEPB1 CCTAAAAAGG | AATAAA | AATAAA | AATAAA | TTTTTTCC 9.5 | 222.5 | 247.5 | 259.5 | 323.5 PPDB 244972_at LLHC 10 0.682224 575.779000 680.004000 791.925000 790.194000 667.347000 569.224000 176.903000 573.008000 386.617000 1485.700000 771.507000 912.779000 7.075911 127.039958
TAIR:ATCG00690 PLACE:S000483 | PLACE:S000153 SORLIP2AT | LTRECOREATCOR15 GGGCC | CCGAC 331 | 461 PPDB 244973_at LLHC 11 0.739295 235.080000 266.064000 316.016000 415.991000 323.061000 143.455000 50.299600 131.118000 97.728900 349.571000 195.737000 300.135000 6.933372 45.181173
TAIR:ATCG00700 PLACE:S000109 | PLACE:S000153 TATABOX2 | LTRECOREATCOR15 TATAAAT | CCGAC 198 | 459 TAIR9 244974_at LLHC 2 0.648701 41.271700 49.317100 54.064400 32.778500 34.892300 44.060600 28.132500 39.566800 39.356200 23.710100 29.476500 38.558600 21.807888 3.034971
TAIR:ATCG00710 PLACE:S000477 | PLACE:S000477 ANAERO1CONSENSUS | ANAERO1CONSENSUS AAACAAA | AAACAAA 399 | 410 PPDB 244975_at LLHC 7 0.840296 2481.460000 2712.390000 2864.060000 2619.960000 2061.370000 2281.390000 2084.420000 2266.820000 2768.510000 2398.300000 2223.570000 1890.980000 1.607896 170.357202
TAIR:ATCG00720 - - - - PPDB 244976_at LLHC 8 0.755592 5946.280000 6280.720000 6747.770000 6570.120000 6210.010000 5693.280000 6195.530000 5930.230000 6089.770000 6036.060000 6305.620000 5456.320000 3.376267 157.423752
TAIR:ATCG00730 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 AATAAA | AATAAA | AATAAA | AATAAA 127.5 | 265.5 | 278.5 | 327.5 PPDB 244977_at LLHC 14 0.510796 17.245200 12.974300 15.168000 22.447400 15.580000 16.865200 3.806640 9.298880 5.684930 12.901000 10.628200 16.333400 9.627206 1.444887
TAIR:ATCG00740 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 POLASIG1 | POLASIG1 | POLASIG2 AATAAA | AATAAA | AATTAAA 36.5 | 338.5 | 358 PPDB 244978_at LLHC 1 0.608076 1101.710000 1227.940000 1171.470000 837.365000 1089.510000 1259.780000 782.907000 1030.700000 1306.080000 834.305000 797.657000 1091.670000 21.472348 45.516634
TAIR:ATCG00750 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244979_at LLHC 6 0.787894 565.784000 637.540000 616.969000 478.007000 400.100000 562.882000 482.952000 738.826000 882.225000 511.790000 508.230000 586.750000 12.631692 59.821229
TAIR:ATCG00760 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244980_at LLHC 4 0.717726 347.788000 343.644000 337.456000 295.182000 293.671000 274.901000 314.115000 425.675000 341.170000 317.943000 286.810000 365.015000 21.856872 19.395448
TAIR:ATCG00770 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244981_at LLHC 20 0.514477 258.801000 178.933000 262.530000 233.584000 265.281000 337.704000 169.441000 250.391000 236.804000 188.044000 193.879000 234.232000 22.832330 7.752235
TAIR:ATCG00780 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244982_at LLHC 20 0.536352 287.984000 230.145000 249.798000 170.519000 262.692000 322.465000 147.058000 278.251000 182.579000 171.114000 189.773000 266.486000 16.427800 18.154712
TAIR:ATCG00790 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 | PLACE:S000414 POLASIG1 | POLASIG1 | POLASIG2 | ABRELATERD1 AATAAA | AATAAA | AATTAAA | ACGTG 162.5 | 326.5 | 360 | 540 PPDB 244983_at LLHC 0 0.486974 1482.970000 1274.010000 1316.840000 1093.020000 1411.480000 1703.380000 1035.380000 1877.760000 1199.990000 1148.330000 1003.740000 941.815000 20.439355 73.633226
TAIR:ATCG00800 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244984_at LLHC 1 0.609747 2321.670000 2738.860000 2189.240000 1941.310000 2167.690000 2493.810000 1956.040000 2470.260000 2426.110000 1976.820000 2361.190000 2896.730000 18.288326 90.866662
TAIR:ATCG00810 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244985_at LLHC 21 0.664682 2477.100000 2384.710000 2069.640000 1945.890000 1918.600000 3879.530000 2136.800000 2344.860000 1876.650000 1644.700000 1610.860000 2124.250000 16.957288 229.507516
TAIR:ATCG00820 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244986_at LLHC 7 0.649453 1869.990000 1693.770000 1959.270000 1293.680000 1898.810000 1736.380000 1269.650000 1665.670000 2078.970000 1355.870000 1418.410000 1606.710000 12.958121 54.934243
TAIR:ATCG01310 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244987_s_at LLHC 19 0.605310 3891.840000 3115.890000 3657.690000 3638.750000 4096.580000 3953.430000 2272.710000 3305.970000 2787.920000 3568.070000 3286.850000 4456.040000 0.803769 215.886766
TAIR:ATCG00840 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244988_s_at LLHC 12 0.669279 2037.440000 1548.370000 1861.600000 2240.230000 1908.560000 1643.680000 1275.190000 1810.360000 1504.400000 2026.920000 2228.980000 2282.170000 9.163651 131.130341
TAIR:ATCG01280 - - - - TAIR9 244989_s_at LLHC 7 0.695059 11.140900 8.219720 8.208680 9.888240 8.588450 6.877610 9.154370 9.061120 8.033820 9.840110 8.442380 7.203230 0.703203 0.177039
TAIR:ATCG01270 PLACE:S000111 TATABOX4 TATATAA 294 TAIR9 244990_s_at LLHC 8 0.459990 39.934200 34.249700 37.788400 38.743900 34.311100 16.367900 19.756200 30.123700 34.854400 28.271700 27.868000 42.732100 2.909749 1.569519
* Row count is limited to 100.