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DIURNAL gene expression + PLACE promoter motif

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the various sizes of motifs predicted by PLACE (Plant Cis-acting Regulatory DNA Elements) database. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE):
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_PLACE_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PLACE_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PLACE_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PLACE_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PLACE_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PLACE_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PLACE_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://www.dna.affrc.go.jp/PLACE/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PLACE_LL_LDHC
#download_from http://linkdata.org/work/rdf1s746i
#namespace ATTED http://atted.jp/data/locus/
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif name motif sequence motif position Origin of baseline sequence Probe Condition Phase Correlation label:LL_LDHC_0_hours label:LL_LDHC_4_hours label:LL_LDHC_8_hours label:LL_LDHC_12_hours label:LL_LDHC_16_hours label:LL_LDHC_20_hours label:LL_LDHC_24_hours label:LL_LDHC_28_hours label:LL_LDHC_32_hours label:LL_LDHC_36_hours label:LL_LDHC_40_hours label:LL_LDHC_44_hours Sine Phase Sine Amplitude
#object_type_xsd string string string string string string string string string string string string string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
TAIR:ATMG00640 PLACE:S000483 SORLIP2AT GGGCC 79 PPDB 244901_at LL_LDHC 7 0.480197 6.844700 6.298550 6.312390 6.386820 5.749720 6.070060 6.274450 6.314910 6.969810 7.616590 6.939000 6.983370 5.512631 0.087064
TAIR:ATMG00650 PLACE:S000394 | PLACE:S000414 | PLACE:S000483 | PLACE:S000153 ACGTABREMOTIFA2OSEM | ABRELATERD1 | SORLIP2AT | LTRECOREATCOR15 ACGTGTC | ACGTG | GGGCC | CCGAC 77 | 78 | 101 | 159 TAIR9 244902_at LL_LDHC 20 0.871654 6.494030 4.237230 4.739310 4.782230 7.552340 7.081680 6.414230 5.818480 5.332790 5.025470 5.641600 6.633940 13.981574 0.563583
TAIR:ATMG00660 PLACE:S000483 | PLACE:S000474 | PLACE:S000474 | PLACE:S000167 | PLACE:S000507 SORLIP2AT | SITEIIATCYTC | SITEIIATCYTC | MYBPLANT | ABRERATCAL GGGCC | TGGGCC | TGGGCT | AACCAACC | AACGCGG 212 | 212.5 | 217.5 | 303.5 | 531 TAIR9 244903_at LL_LDHC 10 0.683502 6.145550 5.344920 8.685210 6.698220 5.482330 5.200810 5.875240 4.589370 5.390110 6.971900 7.285740 6.233350 6.145180 0.365831
TAIR:ATMG00670 PLACE:S000477 | PLACE:S000111 | PLACE:S000111 | PLACE:S000477 ANAERO1CONSENSUS | TATABOX4 | TATABOX4 | ANAERO1CONSENSUS AAACAAA | TATATAA | TATATAA | AAACAAA 98 | 155 | 212 | 398 TAIR9 244904_at LL_LDHC 8 0.801271 7.974240 8.374520 15.876200 7.232760 5.932630 7.584570 7.557890 7.411740 9.708480 8.983660 6.390080 6.293200 10.660476 1.165787
TAIR:ATMG00680 PLACE:S000153 LTRECOREATCOR15 CCGAC 478 TAIR9 244905_at LL_LDHC 8 0.600647 4.316150 7.269970 5.510220 6.443210 4.725560 5.783440 4.893490 6.144810 5.829680 7.890260 5.055220 6.848040 3.512038 0.278841
TAIR:ATMG00690 PLACE:S000080 | PLACE:S000200 POLASIG1 | HBOXCONSENSUSPVCHS AATAAA | CCTACCTTAGAATCT 343.5 | 540 TAIR9 244906_at LL_LDHC 15 0.525061 3.273270 4.326270 3.942180 4.718720 4.457500 3.960290 5.635070 3.201910 4.261420 5.193840 5.156000 5.169140 9.915003 0.254258
TAIR:ATMG00710 - - - - TAIR9 244907_at LL_LDHC 6 0.752768 6.815750 9.985810 9.724340 4.986490 5.907680 5.713150 6.453920 6.582410 6.800530 5.249410 5.374990 5.726660 22.717563 0.792693
TAIR:ATMG00720 - - - - TAIR9 244908_at LL_LDHC 2 0.612736 6.802590 6.436240 3.990700 6.009250 4.783410 3.984560 4.818140 5.503060 5.201840 5.172180 4.142010 4.559910 22.193956 0.296846
TAIR:ATMG00740 PLACE:S000477 | PLACE:S000507 | PLACE:S000477 ANAERO1CONSENSUS | ABRERATCAL | ANAERO1CONSENSUS AAACAAA | AACGTGG | AAACAAA 72 | 103 | 126 TAIR9 244909_at LL_LDHC 20 0.527242 4.303490 5.524570 4.951850 4.064820 4.164940 5.362890 4.212670 4.486250 5.209900 5.430950 5.008850 5.721470 3.559904 0.010358
TAIR:ATMG00750 PLACE:S000507 | PLACE:S000474 ABRERATCAL | SITEIIATCYTC CACGCGG | TGGGCT 332 | 361.5 TAIR9 244910_s_at LL_LDHC 7 0.485510 7.329710 5.552760 6.606500 5.954200 5.717540 5.409630 5.209500 4.774530 5.638240 5.384150 5.002780 4.145100 0.647847 0.168183
TAIR:AT2G07783 PLACE:S000149 CCA1ATLHCB1 AACAATCT 317.5 TAIR9 244912_at LL_LDHC 0 0.497966 27.282400 26.297500 20.531100 10.694600 23.379400 23.346200 20.458300 10.969000 20.822100 18.044400 10.153600 22.355600 17.911713 1.920742
TAIR:ATMG00840 PLACE:S000426 UPRMOTIFIIAT CCCAGAGTAGCCAACCACG 107 TAIR9 244913_at LL_LDHC 3 0.523965 3.930850 5.824490 3.542100 3.019360 4.116190 3.788290 3.438820 3.991890 4.037180 3.646780 3.534690 6.211060 18.280543 0.250368
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244914_at LL_LDHC 23 0.721726 13.100200 6.671130 8.022600 7.069190 6.129980 10.159700 9.918130 7.839610 10.496600 8.128140 6.793580 7.297010 19.056538 0.700228
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244915_s_at LL_LDHC 8 0.510390 4.657660 4.612930 5.384460 3.940980 5.164540 4.139170 4.122160 4.678210 4.491490 4.416370 4.892710 4.113640 3.075522 0.089252
TAIR:ATMG00880 PLACE:S000474 SITEIIATCYTC TGGGCT 409.5 TAIR9 244916_at LL_LDHC 4 0.622812 3.166160 5.087660 3.117940 3.103960 3.352460 2.862430 3.720020 4.172240 4.298410 3.548570 4.368020 4.079580 22.418821 0.158738
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244917_at LL_LDHC 16 0.561127 5.030240 3.559230 4.705610 5.019540 3.903220 4.073430 4.282470 3.581690 4.301850 3.865290 3.671460 4.290450 9.908596 0.017735
TAIR:ATMG00960 PLACE:S000507 ABRERATCAL AACGCGG 301 TAIR9 244919_at LL_LDHC 8 0.701671 2.995410 3.268380 3.532760 3.700110 2.991450 3.779760 3.381090 3.175360 4.813680 3.181840 2.779520 2.734190 1.771708 0.202161
TAIR:ATMG00990 PLACE:S000483 | PLACE:S000483 | PLACE:S000071 | PLACE:S000483 | PLACE:S000474 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SORLIP2AT | NONAMERMOTIFTAH3H4 | SORLIP2AT | SITEIIATCYTC | SORLIP2AT | SITEIIATCYTC GGGCC | GGGCC | CATCCAACG | GGGCC | TGGGCC | GGGCC | TGGGCC 93 | 176 | 230 | 402 | 402.5 | 450 | 450.5 TAIR9 244920_s_at LL_LDHC 4 0.563202 39.722300 36.589100 35.876300 31.377900 41.859700 27.241200 35.732000 50.589100 24.779700 23.579100 21.399900 43.245200 16.794649 3.276081
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244921_s_at LL_LDHC 21 0.715381 30.048300 19.922400 25.250200 20.403900 22.751000 26.359500 25.125800 23.367600 22.792900 25.545700 13.832100 39.485300 16.393267 1.960831
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244922_s_at LL_LDHC 18 0.564886 6.711090 4.853360 6.846640 5.801850 9.486330 6.805210 5.849510 6.599750 6.727900 6.060020 5.615750 8.738420 11.889170 0.405619
TAIR:ATMG01020 PLACE:S000477 | PLACE:S000111 ANAERO1CONSENSUS | TATABOX4 AAACAAA | TATATAA 95 | 159 TAIR9 244923_s_at LL_LDHC 21 0.595041 12.854100 14.223900 10.061400 10.540300 15.171600 11.293100 13.101300 10.457800 9.229760 10.965900 9.174760 21.425800 14.998718 1.335789
TAIR:ATMG01040 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 376 TAIR9 244924_at LL_LDHC 7 0.896324 5.392690 7.560840 6.951350 6.631590 5.721090 5.419480 5.938410 7.381660 6.745710 4.940380 4.804740 6.055220 12.564721 0.484415
TAIR:ATMG00510 PLACE:S000477 | PLACE:S000111 | PLACE:S000081 | PLACE:S000186 ANAERO1CONSENSUS | TATABOX4 | POLASIG2 | SURE1STPAT21 AAACAAA | TATATAA | AATTAAA | AATAGAAAA 151 | 293 | 408 | 414 TAIR9 244925_at LL_LDHC 0 0.692743 95.434300 45.051600 35.594900 21.482900 23.290000 44.684200 25.936200 55.136800 25.711000 22.676200 23.377800 29.904700 19.165742 9.664360
TAIR:ATMG00520 PLACE:S000153 | PLACE:S000426 | PLACE:S000080 LTRECOREATCOR15 | UPRMOTIFIIAT | POLASIG1 CCGAC | CCTTTCACCTCTTCCCACG | AATAAA 179 | 357 | 516.5 TAIR9 244926_s_at LL_LDHC 10 0.710412 3.548620 3.603280 4.393630 3.799600 4.230760 3.183160 3.415460 4.685640 4.061870 3.484330 3.668430 3.987320 10.140904 0.136744
TAIR:ATMG00530 PLACE:S000483 | PLACE:S000474 | PLACE:S000414 SORLIP2AT | SITEIIATCYTC | ABRELATERD1 GGGCC | TGGGCC | ACGTG 172 | 172.5 | 458 TAIR9 244927_at LL_LDHC 5 0.597448 5.411360 8.791040 5.897000 5.492670 4.182040 4.742660 5.313800 4.735230 5.302930 4.678050 4.833560 5.633020 22.171523 0.433772
TAIR:ATMG00570 PLACE:S000111 | PLACE:S000153 TATABOX4 | LTRECOREATCOR15 TATATAA | CCGAC 184 | 549 TAIR9 244928_s_at LL_LDHC 22 0.478116 8.326320 9.611130 6.850430 6.712740 9.326080 5.924270 6.673460 4.900090 4.126010 4.873330 5.696350 9.236350 15.482791 0.553396
TAIR:AT2G07717 PLACE:S000167 | PLACE:S000192 | PLACE:S000080 | PLACE:S000109 MYBPLANT | ACIPVPAL2 | POLASIG1 | TATABOX2 CACCTACC | CCCACCTACC | AATAAA | TATAAAT 33.5 | 34.5 | 125.5 | 129 TAIR9 244929_at LL_LDHC 8 0.457480 170.422000 176.235000 149.320000 143.446000 165.344000 119.759000 146.091000 107.093000 160.800000 125.514000 121.973000 119.266000 12.651591 4.914287
TAIR:AT2G07809 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 17 | 207.5 TAIR9 244930_at LL_LDHC 2 0.669471 5.120270 5.448800 3.938930 3.462340 3.843510 3.584260 4.478240 4.007030 4.225200 4.463380 3.685030 4.351420 20.433909 0.261499
TAIR:ATMG00630 PLACE:S000483 | PLACE:S000483 SORLIP2AT | SORLIP2AT GGGCC | GGGCC 387 | 428 TAIR9 244931_at LL_LDHC 0 0.821619 8.176850 7.403770 7.110330 5.969430 6.324530 7.767110 9.229630 9.781800 8.987310 6.610870 7.024530 7.753000 20.042103 0.625214
TAIR:ATCG01060 PLACE:S000149 CCA1ATLHCB1 AAAAATCT 80.5 TAIR9 244932_at LL_LDHC 20 0.632357 381.466000 724.219000 345.665000 556.628000 605.692000 699.214000 377.461000 230.447000 602.219000 485.321000 366.829000 823.441000 0.033967 42.770789
TAIR:ATCG01070 PLACE:S000483 | PLACE:S000477 | PLACE:S000185 SORLIP2AT | ANAERO1CONSENSUS | SURE2STPAT21 GGGCC | AAACAAA | AATACTAAT 90 | 361 | 433 PPDB 244933_at LL_LDHC 22 0.534503 688.101000 536.200000 296.473000 523.386000 539.914000 656.710000 440.421000 285.123000 562.374000 480.893000 303.572000 564.723000 21.235508 37.055448
TAIR:ATCG01080 PLACE:S000185 | PLACE:S000111 | PLACE:S000081 | PLACE:S000111 | PLACE:S000477 SURE2STPAT21 | TATABOX4 | POLASIG2 | TATABOX4 | ANAERO1CONSENSUS AATACTAAT | TATATAA | AATTAAA | TATATAA | AAACAAA 52 | 176 | 198 | 212 | 278 TAIR9 244934_at LL_LDHC 20 0.631103 106.952000 116.453000 89.774800 96.246200 167.135000 160.432000 109.605000 80.804800 92.536500 102.859000 54.151800 132.495000 13.834468 10.956628
TAIR:ATCG01090 PLACE:S000153 LTRECOREATCOR15 CCGAC 288 PPDB 244935_at LL_LDHC 16 0.591043 8218.460000 8864.640000 7733.790000 9433.770000 8731.750000 9423.610000 8263.010000 8311.130000 8457.580000 8282.800000 9269.290000 8358.110000 10.521823 188.253551
TAIR:ATCG01100 PLACE:S000080 POLASIG1 AATAAA 452.5 TAIR9 244936_at LL_LDHC 19 0.517026 2996.560000 4033.700000 2354.030000 3859.430000 3747.790000 3801.690000 3098.780000 2905.260000 4046.820000 3145.060000 3569.010000 4368.150000 0.436872 155.953019
TAIR:ATCG01110 PLACE:S000081 | PLACE:S000053 | PLACE:S000081 | PLACE:S000080 | PLACE:S000081 POLASIG2 | HEXMOTIFTAH3H4 | POLASIG2 | POLASIG1 | POLASIG2 AATTAAA | ACGTCA | AATTAAA | AATAAA | AATTAAA 30 | 110.5 | 381 | 456.5 | 522 TAIR9 244937_at LL_LDHC 20 0.784875 79.583100 131.011000 60.715700 154.225000 151.710000 389.641000 151.551000 108.704000 241.455000 132.340000 130.226000 236.635000 22.994330 27.380852
TAIR:ATCG01120 PLACE:S000081 | PLACE:S000080 | PLACE:S000081 | PLACE:S000111 | PLACE:S000471 POLASIG2 | POLASIG1 | POLASIG2 | TATABOX4 | UP1ATMSD AATTAAA | AATAAA | AATTAAA | TATATAA | GGCCCAATT 11 | 86.5 | 152 | 212 | 349 TAIR9 244938_at LL_LDHC 2 0.637851 358.380000 348.171000 346.365000 263.006000 267.242000 294.597000 352.548000 241.921000 352.233000 195.977000 278.294000 478.374000 18.316011 26.039856
TAIR:ATCG00065 PLACE:S000080 | PLACE:S000080 | PLACE:S000186 | PLACE:S000111 POLASIG1 | POLASIG1 | SURE1STPAT21 | TATABOX4 AATAAA | AATAAA | AATAGAAAA | TATATAA 5.5 | 100.5 | 351 | 546 TAIR9 244939_at LL_LDHC 12 0.438282 188.360000 306.434000 156.676000 298.098000 142.661000 174.764000 164.586000 95.391000 169.540000 192.032000 158.745000 212.143000 8.085411 5.521784
TAIR:ATCG01230 PLACE:S000414 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 ABRELATERD1 | POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 ACGTG | AATAAA | AATAAA | AATAAA | AATAAA 90 | 331.5 | 351.5 | 373.5 | 473.5 TAIR9 244940_at LL_LDHC 4 0.299392 1452.710000 1771.230000 1657.220000 1640.190000 1383.410000 1427.120000 1302.950000 956.286000 1293.740000 1304.510000 1134.030000 1558.920000 1.578642 13.790319
TAIR:ATMG00010 PLACE:S000080 | PLACE:S000153 POLASIG1 | LTRECOREATCOR15 AATAAA | CCGAC 53.5 | 450 TAIR9 244941_at LL_LDHC 18 0.734392 6.956630 5.814280 5.943910 9.512940 7.928740 7.404840 8.435930 7.050000 6.830060 6.669650 8.110410 9.099820 11.673701 0.500190
TAIR:ATMG00050 PLACE:S000483 | PLACE:S000474 | PLACE:S000081 | PLACE:S000080 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SITEIIATCYTC | POLASIG2 | POLASIG1 | SORLIP2AT | SITEIIATCYTC GGGCC | TGGGCC | AATTAAA | AATAAA | GGGCC | TGGGCT 248 | 248.5 | 287 | 411.5 | 435 | 478.5 TAIR9 244942_at LL_LDHC 15 0.444899 3.968110 4.057280 2.989200 4.055550 5.081370 3.529780 3.452690 3.817990 4.047770 4.111730 3.388240 4.377070 10.290489 0.117215
TAIR:ATMG00070 PLACE:S000483 SORLIP2AT GGGCC 212 PPDB 244943_at LL_LDHC 20 0.501152 10.188600 7.103930 7.236620 5.483290 7.352220 6.209580 7.134850 5.500780 9.798330 6.051350 11.797800 12.035300 22.338340 0.617169
TAIR:ATMG00110 PLACE:S000111 | PLACE:S000220 | PLACE:S000483 | PLACE:S000153 | PLACE:S000081 TATABOX4 | GRAZMRAB28 | SORLIP2AT | LTRECOREATCOR15 | POLASIG2 TATATAA | CATGCCGCC | GGGCC | CCGAC | AATTAAA 55 | 129 | 217 | 340 | 482 TAIR9 244945_at LL_LDHC 3 0.806521 7.642400 9.436720 6.774550 6.005000 6.696500 8.063440 7.348330 9.374310 7.862890 7.771780 5.937570 6.652300 21.371939 0.569750
TAIR:ATMG00130 PLACE:S000080 POLASIG1 AATAAA 133.5 TAIR9 244947_at LL_LDHC 7 0.641139 4.317460 4.719890 4.578910 4.260150 4.448380 4.953660 4.556890 5.248810 7.020050 4.737690 4.531370 4.778220 0.854234 0.211380
TAIR:ATMG00140 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 134 | 542.5 TAIR9 244948_at LL_LDHC 8 0.691701 5.877560 5.856820 6.007570 7.424330 6.974600 4.504290 5.464300 7.518520 6.268860 5.235870 6.431880 5.191200 3.328150 0.285816
TAIR:ATMG00150 - - - - TAIR9 244949_at LL_LDHC 6 0.775519 4.108380 5.032520 4.771900 3.955780 4.782840 4.351510 4.050990 4.511810 5.103050 3.777120 4.100760 3.793290 0.199497 0.172783
TAIR:ATMG00160 PLACE:S000111 | PLACE:S000483 | PLACE:S000414 | PLACE:S000080 | PLACE:S000167 TATABOX4 | SORLIP2AT | ABRELATERD1 | POLASIG1 | MYBPLANT TATATAA | GGGCC | ACGTG | AATAAA | CACCAACC 61 | 95 | 246 | 292.5 | 409.5 PPDB 244950_at LL_LDHC 19 0.568811 6.055340 7.172350 6.965590 6.810730 6.196710 7.910890 8.578550 5.252480 8.850830 8.045930 9.764030 12.048500 23.953615 0.554216
TAIR:AT2G07723 PLACE:S000414 ABRELATERD1 ACGTG 147 TAIR9 244951_s_at LL_LDHC 12 0.584974 18.013500 37.557000 20.133200 43.475200 29.543000 31.343900 33.643600 16.156400 12.347100 33.631700 17.491000 17.690700 8.115034 1.355251
TAIR:ATMG00260 PLACE:S000081 | PLACE:S000080 POLASIG2 | POLASIG1 AATTAAA | AATAAA 130 | 147.5 TAIR9 244952_at LL_LDHC 18 0.455724 5.436310 4.474940 4.827040 4.643740 5.939150 3.911810 4.820340 3.967910 3.892510 5.926850 4.172570 4.829990 2.521996 0.154521
TAIR:ATMG00270 PLACE:S000474 | PLACE:S000507 SITEIIATCYTC | ABRERATCAL TGGGCT | CACGCGG 283.5 | 332 TAIR9 244953_s_at LL_LDHC 4 0.612984 6.070580 7.918270 6.487470 5.537090 6.527860 6.405540 5.164840 7.071670 4.109360 4.005020 5.585400 7.070700 18.001976 0.380946
TAIR:AT2G07732 PLACE:S000440 CDA1ATCAB2 CAAAACGC 125.5 TAIR9 244954_s_at LL_LDHC 0 0.484526 11.304000 6.610840 9.959010 5.623380 6.272710 9.014870 8.394230 11.294100 6.707310 9.665070 8.430240 7.759310 19.589166 0.552525
TAIR:ATMG00320 PLACE:S000385 | PLACE:S000474 EVENINGAT | SITEIIATCYTC AAAATATCT | TGGGCT 334 | 453.5 TAIR9 244955_at LL_LDHC 20 0.538332 4.179170 6.054010 5.458580 3.739520 3.872690 4.468720 4.345170 3.762110 4.196640 5.220070 4.519190 8.003480 15.627343 0.172708
TAIR:AT2G07737 PLACE:S000472 UP2ATMSD AAACCCTA 17.5 TAIR9 244956_s_at LL_LDHC 4 0.513335 4.695010 6.652230 4.463320 4.762310 5.938270 5.060740 5.960120 6.772540 5.958900 6.344330 5.906740 6.886980 17.837092 0.091844
TAIR:ATMG00400 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 277 TAIR9 244957_at LL_LDHC 5 0.713758 9.328400 7.943400 10.340700 7.570190 8.625200 9.628230 9.795480 10.721900 6.694910 5.528810 8.662590 12.794100 19.350591 0.835609
TAIR:AT2G07703 PLACE:S000460 | PLACE:S000483 | PLACE:S000483 | PLACE:S000474 CTRMCAMV35S | SORLIP2AT | SORLIP2AT | SITEIIATCYTC TCTCTCTCT | GGGCC | GGGCC | TGGGCC 238 | 292 | 332 | 332.5 TAIR9 244958_at LL_LDHC 7 0.534534 3.911240 4.967740 4.605360 6.044950 4.381820 3.919410 7.495940 5.513090 4.511790 4.610730 4.572840 5.374930 15.594590 0.165307
TAIR:ATMG00500 PLACE:S000153 LTRECOREATCOR15 CCGAC 31 TAIR9 244959_s_at LL_LDHC 0 0.428672 17.670400 8.078450 12.456200 7.004820 11.037900 8.061780 7.074960 8.695960 6.048820 9.387300 8.446730 10.003300 19.078380 0.588130
TAIR:ATCG01020 PLACE:S000080 | PLACE:S000111 | PLACE:S000477 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 POLASIG1 | TATABOX4 | ANAERO1CONSENSUS | TATABOX4 | POLASIG1 | POLASIG1 AATAAA | TATATAA | AAACAAA | TATATAA | AATAAA | AATAAA 12.5 | 17 | 311 | 333 | 462.5 | 542.5 TAIR9 244960_at LL_LDHC 17 0.575103 3072.300000 3398.200000 3129.840000 3206.800000 3442.260000 3144.220000 3357.620000 3163.530000 3431.860000 3118.220000 3503.360000 3427.590000 11.099240 29.243869
TAIR:ATCG01040 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000080 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | POLASIG1 AATAAA | TATAAAT | AAAAATCT | AATAAA 177.5 | 334 | 502.5 | 540.5 TAIR9 244961_at LL_LDHC 3 0.701474 5328.580000 5706.670000 4572.090000 4785.070000 4287.430000 4483.380000 5405.480000 4195.620000 4417.350000 4329.180000 4636.430000 5109.070000 17.487901 202.696407
TAIR:ATCG01050 PLACE:S000080 | PLACE:S000149 POLASIG1 | CCA1ATLHCB1 AATAAA | AAAAATCT 19.5 | 458.5 TAIR9 244962_at LL_LDHC 0 0.368895 2855.930000 3528.080000 1836.240000 2239.130000 3142.300000 2942.450000 2534.130000 2115.860000 3129.000000 2819.910000 2157.570000 3298.840000 20.351524 116.473161
TAIR:ATCG00570 PLACE:S000080 POLASIG1 AATAAA 454.5 TAIR9 244963_at LL_LDHC 5 0.550777 4836.190000 5610.800000 4949.430000 5166.550000 3978.810000 4040.220000 4404.560000 3801.620000 4364.780000 3884.020000 3513.350000 4480.150000 22.815199 205.689063
TAIR:ATCG00580 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000477 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | ANAERO1CONSENSUS AATAAA | TATAAAT | AAAAATCT | AAACAAA 193.5 | 319 | 362.5 | 399 TAIR9 244964_at LL_LDHC 6 0.450043 1092.810000 1482.180000 1211.220000 1140.640000 899.491000 981.744000 700.922000 845.456000 938.315000 820.016000 766.080000 963.615000 23.684927 62.728839
TAIR:ATCG00590 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000063 | PLACE:S000080 | PLACE:S000149 POLASIG1 | POLASIG1 | POLASIG1 | MARABOX1 | POLASIG1 | CCA1ATLHCB1 AATAAA | AATAAA | AATAAA | AATAAATAAA | AATAAA | AAAAATCT 311.5 | 349.5 | 491.5 | 493.5 | 495.5 | 526.5 TAIR9 244965_at LL_LDHC 12 0.212025 1204.110000 1452.340000 1030.260000 1665.430000 1083.270000 1164.500000 1105.910000 795.145000 1194.940000 823.541000 988.149000 1111.950000 9.924423 10.523602
TAIR:ATCG00600 - - - - TAIR9 244966_at LL_LDHC 0 0.715110 8.162020 8.489110 5.459520 6.842770 4.692900 9.990370 7.903120 7.552720 6.581560 5.976750 7.688850 6.928050 17.467610 0.632326
TAIR:ATCG00630 PLACE:S000080 | PLACE:S000111 | PLACE:S000081 | PLACE:S000507 | PLACE:S000477 | PLACE:S000081 POLASIG1 | TATABOX4 | POLASIG2 | ABRERATCAL | ANAERO1CONSENSUS | POLASIG2 AATAAA | TATATAA | AATTAAA | AACGCGC | AAACAAA | AATTAAA 14.5 | 29 | 230 | 380 | 385 | 499 PPDB 244967_at LL_LDHC 16 0.544398 6988.920000 7248.980000 6385.590000 8104.700000 7352.480000 6868.560000 5976.770000 6979.340000 6937.080000 6907.500000 7212.220000 7348.370000 3.927460 172.001288
TAIR:ATCG00640 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244968_at LL_LDHC 21 0.624666 3151.580000 3111.630000 2438.260000 3218.950000 3021.770000 2760.370000 2782.800000 2419.750000 2008.080000 2037.300000 2922.060000 3202.010000 14.424599 172.844277
TAIR:ATCG00650 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244969_at LL_LDHC 21 0.882310 2652.020000 2587.030000 2193.270000 2443.190000 2953.980000 3137.630000 3083.600000 2443.190000 2439.350000 2354.390000 2585.590000 2618.530000 14.757592 157.014430
TAIR:ATCG00660 PLACE:S000081 POLASIG2 AATTAAA 222 TAIR9 244970_at LL_LDHC 8 0.533801 180.772000 200.477000 301.368000 173.733000 140.026000 312.536000 139.601000 131.213000 219.003000 157.518000 96.485700 80.455000 11.468788 16.218346
TAIR:ATCG00670 PLACE:S000080 | PLACE:S000404 POLASIG1 | CARGATCONSENSUS AATAAA | CCTTTTTAGG 15.5 | 319.5 TAIR9 244971_at LL_LDHC 19 0.634750 1477.410000 1751.590000 1415.670000 1458.320000 1923.100000 1739.980000 1883.220000 1668.560000 1642.020000 1615.230000 1565.480000 2304.000000 14.615962 98.278821
TAIR:ATCG00680 PLACE:S000404 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000298 CARGATCONSENSUS | POLASIG1 | POLASIG1 | POLASIG1 | PYRIMIDINEBOXHVEPB1 CCTAAAAAGG | AATAAA | AATAAA | AATAAA | TTTTTTCC 9.5 | 222.5 | 247.5 | 259.5 | 323.5 PPDB 244972_at LL_LDHC 19 0.668078 414.908000 907.647000 206.566000 369.105000 1104.370000 958.701000 511.202000 543.493000 879.505000 728.698000 435.781000 1410.010000 13.312755 105.138736
TAIR:ATCG00690 PLACE:S000483 | PLACE:S000153 SORLIP2AT | LTRECOREATCOR15 GGGCC | CCGAC 331 | 461 PPDB 244973_at LL_LDHC 22 0.641140 424.176000 467.638000 264.213000 364.347000 343.691000 380.082000 534.252000 302.006000 402.494000 389.473000 260.247000 714.752000 16.374839 45.884472
TAIR:ATCG00700 PLACE:S000109 | PLACE:S000153 TATABOX2 | LTRECOREATCOR15 TATAAAT | CCGAC 198 | 459 TAIR9 244974_at LL_LDHC 9 0.432970 48.918200 56.260000 41.494500 69.672800 38.515800 27.910900 23.575700 28.485300 39.925100 30.339300 32.428400 40.168200 3.283931 3.001307
TAIR:ATCG00710 PLACE:S000477 | PLACE:S000477 ANAERO1CONSENSUS | ANAERO1CONSENSUS AAACAAA | AAACAAA 399 | 410 PPDB 244975_at LL_LDHC 20 0.601994 2812.150000 3583.430000 2322.040000 3218.850000 3217.480000 3713.060000 3200.490000 3011.340000 3420.550000 3078.440000 2778.460000 3674.740000 14.849307 102.820361
TAIR:ATCG00720 - - - - PPDB 244976_at LL_LDHC 0 0.359346 7858.520000 8555.220000 7397.500000 7279.540000 8330.200000 8310.380000 7898.760000 7509.470000 8368.070000 8029.900000 7098.000000 7531.280000 20.074164 78.269530
TAIR:ATCG00730 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 AATAAA | AATAAA | AATAAA | AATAAA 127.5 | 265.5 | 278.5 | 327.5 PPDB 244977_at LL_LDHC 12 0.547510 7.163500 8.675120 7.068360 9.648200 8.744760 6.195670 7.387590 4.536550 6.384040 8.234050 4.524990 5.899030 7.038053 0.349411
TAIR:ATCG00740 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 POLASIG1 | POLASIG1 | POLASIG2 AATAAA | AATAAA | AATTAAA 36.5 | 338.5 | 358 PPDB 244978_at LL_LDHC 6 0.430208 2455.700000 2379.860000 1908.930000 3169.520000 1453.230000 1500.850000 1798.170000 1309.000000 1308.410000 982.609000 1164.390000 1269.630000 13.165090 114.861317
TAIR:ATCG00750 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244979_at LL_LDHC 6 0.415114 2034.630000 1488.270000 1736.100000 1681.750000 747.521000 554.167000 357.576000 344.065000 404.793000 479.814000 354.630000 417.171000 23.974563 137.104893
TAIR:ATCG00760 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244980_at LL_LDHC 4 0.636890 1816.380000 1488.140000 1789.980000 1187.100000 485.774000 685.060000 1025.990000 740.615000 772.944000 644.614000 579.963000 496.686000 22.516419 198.388285
TAIR:ATCG00770 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244981_at LL_LDHC 1 0.561727 727.995000 586.093000 383.317000 506.345000 330.754000 381.957000 382.359000 224.641000 237.572000 238.424000 206.359000 281.716000 19.392670 46.720032
TAIR:ATCG00780 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244982_at LL_LDHC 23 0.565691 729.396000 409.879000 269.234000 565.761000 311.916000 537.836000 368.326000 164.212000 331.914000 281.792000 202.547000 353.031000 19.675205 39.104343
TAIR:ATCG00790 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 | PLACE:S000414 POLASIG1 | POLASIG1 | POLASIG2 | ABRELATERD1 AATAAA | AATAAA | AATTAAA | ACGTG 162.5 | 326.5 | 360 | 540 PPDB 244983_at LL_LDHC 20 0.425821 1380.040000 1362.220000 937.224000 1109.710000 1128.220000 1214.040000 936.157000 660.633000 913.120000 840.571000 810.127000 992.233000 16.543170 52.625862
TAIR:ATCG00800 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244984_at LL_LDHC 17 0.619884 4386.710000 2856.200000 3452.300000 4035.140000 4052.310000 4064.030000 3243.090000 3517.710000 3444.230000 3490.210000 3674.860000 3800.990000 11.833056 167.718034
TAIR:ATCG00810 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244985_at LL_LDHC 22 0.637205 3148.940000 1855.730000 2182.570000 2609.170000 2345.690000 3195.260000 2537.820000 2248.220000 2405.560000 2406.420000 2236.660000 2260.810000 21.559961 121.029313
TAIR:ATCG00820 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244986_at LL_LDHC 2 0.560516 3110.790000 2624.610000 3086.230000 2769.090000 2708.870000 2962.710000 2750.450000 2534.930000 2853.650000 2478.000000 2288.640000 2781.110000 19.829639 56.071726
TAIR:ATCG01310 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244987_s_at LL_LDHC 21 0.511254 3765.960000 3195.510000 3142.860000 3198.410000 3491.320000 3660.440000 2831.980000 2583.040000 3108.600000 3131.300000 2693.520000 3421.000000 22.389904 97.778967
TAIR:ATCG00840 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244988_s_at LL_LDHC 0 0.637031 2961.560000 2447.810000 2072.660000 2772.160000 2690.420000 2683.030000 3438.580000 2282.020000 3053.440000 2201.600000 1723.170000 2112.730000 19.435350 127.149488
TAIR:ATCG01280 - - - - TAIR9 244989_s_at LL_LDHC 4 0.714246 9.876330 12.803800 8.290240 11.605400 9.986820 7.110810 8.681930 11.962100 8.768970 9.438060 10.128500 7.409510 0.861953 0.532352
TAIR:ATCG01270 PLACE:S000111 TATABOX4 TATATAA 294 TAIR9 244990_s_at LL_LDHC 23 0.519305 74.651800 29.223400 28.902600 40.605500 26.279900 51.210500 26.013400 30.104500 34.057000 14.726500 21.753300 18.449200 18.279248 4.539676
* Row count is limited to 100.