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DIURNAL gene expression + PLACE promoter motif

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the various sizes of motifs predicted by PLACE (Plant Cis-acting Regulatory DNA Elements) database. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE):
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_PLACE_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PLACE_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PLACE_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PLACE_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PLACE_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PLACE_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PLACE_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://www.dna.affrc.go.jp/PLACE/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PLACE_LL_LLHC
#download_from http://linkdata.org/work/rdf1s746i
#namespace ATTED http://atted.jp/data/locus/
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif name motif sequence motif position Origin of baseline sequence Probe Condition Phase Correlation label:LL_LLHC_0_hours label:LL_LLHC_4_hours label:LL_LLHC_8_hours label:LL_LLHC_12_hours label:LL_LLHC_16_hours label:LL_LLHC_20_hours label:LL_LLHC_24_hours label:LL_LLHC_28_hours label:LL_LLHC_32_hours label:LL_LLHC_36_hours label:LL_LLHC_40_hours label:LL_LLHC_44_hours Sine Phase Sine Amplitude
#object_type_xsd string string string string string string string string string string string string string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
TAIR:ATMG00640 PLACE:S000483 SORLIP2AT GGGCC 79 PPDB 244901_at LL_LLHC 21 0.523328 6.772310 6.135430 6.062980 6.408480 5.297290 7.694330 7.970600 8.383330 7.075160 8.397220 7.867410 9.588920 15.201634 0.301171
TAIR:ATMG00650 PLACE:S000394 | PLACE:S000414 | PLACE:S000483 | PLACE:S000153 ACGTABREMOTIFA2OSEM | ABRELATERD1 | SORLIP2AT | LTRECOREATCOR15 ACGTGTC | ACGTG | GGGCC | CCGAC 77 | 78 | 101 | 159 TAIR9 244902_at LL_LLHC 21 0.479059 5.728990 4.951710 6.676410 5.656360 4.177070 6.116870 6.861990 6.801430 6.296990 6.872760 6.686610 8.863270 15.823198 0.149448
TAIR:ATMG00660 PLACE:S000483 | PLACE:S000474 | PLACE:S000474 | PLACE:S000167 | PLACE:S000507 SORLIP2AT | SITEIIATCYTC | SITEIIATCYTC | MYBPLANT | ABRERATCAL GGGCC | TGGGCC | TGGGCT | AACCAACC | AACGCGG 212 | 212.5 | 217.5 | 303.5 | 531 TAIR9 244903_at LL_LLHC 0 0.489544 8.892030 6.474810 9.479240 7.235520 5.668780 8.317680 9.710640 6.626680 6.984750 9.859120 7.755680 7.126110 20.388336 0.085968
TAIR:ATMG00670 PLACE:S000477 | PLACE:S000111 | PLACE:S000111 | PLACE:S000477 ANAERO1CONSENSUS | TATABOX4 | TATABOX4 | ANAERO1CONSENSUS AAACAAA | TATATAA | TATATAA | AAACAAA 98 | 155 | 212 | 398 TAIR9 244904_at LL_LLHC 7 0.363348 5.525860 5.499740 5.842470 5.621990 6.050310 5.414690 8.243050 6.909630 7.443640 5.881270 6.855070 7.295020 17.846318 0.144237
TAIR:ATMG00680 PLACE:S000153 LTRECOREATCOR15 CCGAC 478 TAIR9 244905_at LL_LLHC 4 0.627562 5.096770 4.550200 4.771620 4.006410 4.965440 3.885160 5.176490 5.539040 4.971280 4.681810 4.263230 4.799190 14.786724 0.185791
TAIR:ATMG00690 PLACE:S000080 | PLACE:S000200 POLASIG1 | HBOXCONSENSUSPVCHS AATAAA | CCTACCTTAGAATCT 343.5 | 540 TAIR9 244906_at LL_LLHC 20 0.597836 4.109680 5.445980 4.338300 4.137400 4.329900 7.016630 7.594050 6.159900 7.481830 8.806190 9.248640 14.595300 23.021104 0.877691
TAIR:ATMG00710 - - - - TAIR9 244907_at LL_LLHC 1 0.678578 5.172230 4.057090 4.051740 4.080100 4.070150 3.807330 6.144420 5.681860 4.642910 4.573310 4.812270 5.034090 18.732726 0.268669
TAIR:ATMG00720 - - - - TAIR9 244908_at LL_LLHC 22 0.701099 4.177420 4.954970 3.272690 3.242390 4.003590 4.243790 4.409010 4.549500 4.159880 4.153540 4.484750 4.506610 17.578381 0.197660
TAIR:ATMG00740 PLACE:S000477 | PLACE:S000507 | PLACE:S000477 ANAERO1CONSENSUS | ABRERATCAL | ANAERO1CONSENSUS AAACAAA | AACGTGG | AAACAAA 72 | 103 | 126 TAIR9 244909_at LL_LLHC 22 0.443824 3.453110 3.264700 4.070850 3.523020 3.993280 4.230240 4.228200 3.961300 3.768840 3.979760 3.054100 3.754150 18.329019 0.028455
TAIR:ATMG00750 PLACE:S000507 | PLACE:S000474 ABRERATCAL | SITEIIATCYTC CACGCGG | TGGGCT 332 | 361.5 TAIR9 244910_s_at LL_LLHC 0 0.592172 3.573360 3.911750 3.878540 3.280780 4.250730 3.619180 4.174360 4.263370 4.238240 3.636980 3.608700 4.114500 20.482371 0.083344
TAIR:AT2G07783 PLACE:S000149 CCA1ATLHCB1 AACAATCT 317.5 TAIR9 244912_at LL_LLHC 4 0.514458 93.042100 51.914400 94.472700 52.831900 41.820700 51.750200 53.871600 38.969900 42.335100 44.376900 29.013300 29.267900 22.276016 6.082340
TAIR:ATMG00840 PLACE:S000426 UPRMOTIFIIAT CCCAGAGTAGCCAACCACG 107 TAIR9 244913_at LL_LLHC 4 0.620291 3.281570 3.606370 3.501580 3.237870 3.417270 3.022770 3.959550 3.721330 3.503140 3.360800 3.533600 3.217660 22.371939 0.090445
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244914_at LL_LLHC 7 0.499060 5.765970 5.948130 6.852440 4.940020 6.261700 5.979800 5.704830 7.989680 6.087090 5.996020 5.989880 7.218380 15.375919 0.162450
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244915_s_at LL_LLHC 8 0.392558 3.422350 3.762830 4.210340 3.316890 4.158000 4.154300 4.563320 5.306960 4.459870 4.438030 3.903380 4.311000 14.069700 0.102204
TAIR:ATMG00880 PLACE:S000474 SITEIIATCYTC TGGGCT 409.5 TAIR9 244916_at LL_LLHC 16 0.484520 2.357750 2.979560 2.381490 3.351180 2.893250 2.852140 3.033570 2.585490 2.821850 2.681970 2.985790 2.887550 9.614937 0.075641
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244917_at LL_LLHC 13 0.420277 3.047520 3.030210 3.241780 3.921320 3.190420 3.427090 4.183810 3.313840 3.647080 3.679190 3.853680 3.276820 7.919511 0.077182
TAIR:ATMG00960 PLACE:S000507 ABRERATCAL AACGCGG 301 TAIR9 244919_at LL_LLHC 5 0.505815 2.682100 3.041480 3.503100 2.799420 2.908040 3.190690 3.467180 3.427550 3.190670 3.261160 3.806110 4.179320 22.608490 0.071164
TAIR:ATMG00990 PLACE:S000483 | PLACE:S000483 | PLACE:S000071 | PLACE:S000483 | PLACE:S000474 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SORLIP2AT | NONAMERMOTIFTAH3H4 | SORLIP2AT | SITEIIATCYTC | SORLIP2AT | SITEIIATCYTC GGGCC | GGGCC | CATCCAACG | GGGCC | TGGGCC | GGGCC | TGGGCC 93 | 176 | 230 | 402 | 402.5 | 450 | 450.5 TAIR9 244920_s_at LL_LLHC 20 0.217392 30.941900 29.882900 19.169800 20.672100 27.335800 27.684900 39.809600 60.354500 46.845900 51.958300 49.924000 64.929000 15.775270 1.787054
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244921_s_at LL_LLHC 22 0.507470 28.571700 23.376000 15.718300 13.915100 25.053900 22.521800 26.047100 31.043300 24.442300 29.953800 26.384200 28.537100 16.587596 1.580994
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244922_s_at LL_LLHC 0 0.734922 6.054480 6.805280 4.416560 5.018810 5.109550 5.500940 8.485300 7.230930 4.664020 6.039700 5.875380 7.525360 17.577819 0.585218
TAIR:ATMG01020 PLACE:S000477 | PLACE:S000111 ANAERO1CONSENSUS | TATABOX4 AAACAAA | TATATAA 95 | 159 TAIR9 244923_s_at LL_LLHC 4 0.711493 5.928750 7.201650 6.504900 4.819870 5.824770 6.740070 6.644730 6.924430 6.159400 6.612500 6.541310 7.636860 17.945546 0.239810
TAIR:ATMG01040 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 376 TAIR9 244924_at LL_LLHC 1 0.393084 5.195860 4.782230 5.186470 4.094670 4.907280 5.281980 5.426640 6.421930 6.036470 5.693270 5.644930 5.833540 20.047812 0.107288
TAIR:ATMG00510 PLACE:S000477 | PLACE:S000111 | PLACE:S000081 | PLACE:S000186 ANAERO1CONSENSUS | TATABOX4 | POLASIG2 | SURE1STPAT21 AAACAAA | TATATAA | AATTAAA | AATAGAAAA 151 | 293 | 408 | 414 TAIR9 244925_at LL_LLHC 5 0.851661 15.878700 18.036800 15.713000 13.894700 14.394900 12.675100 15.914100 16.649600 14.833900 11.175200 13.357400 14.918200 15.033197 1.018045
TAIR:ATMG00520 PLACE:S000153 | PLACE:S000426 | PLACE:S000080 LTRECOREATCOR15 | UPRMOTIFIIAT | POLASIG1 CCGAC | CCTTTCACCTCTTCCCACG | AATAAA 179 | 357 | 516.5 TAIR9 244926_s_at LL_LLHC 20 0.422624 3.647970 3.250340 3.931130 3.403620 3.597690 4.254290 4.195420 4.763540 4.207240 4.162840 4.061970 4.584990 16.635608 0.071558
TAIR:ATMG00530 PLACE:S000483 | PLACE:S000474 | PLACE:S000414 SORLIP2AT | SITEIIATCYTC | ABRELATERD1 GGGCC | TGGGCC | ACGTG 172 | 172.5 | 458 TAIR9 244927_at LL_LLHC 8 0.670297 4.745500 5.290750 4.534350 5.239880 4.507460 4.537710 4.100890 4.186780 5.930920 5.207540 5.326500 4.820850 4.962297 0.201784
TAIR:ATMG00570 PLACE:S000111 | PLACE:S000153 TATABOX4 | LTRECOREATCOR15 TATATAA | CCGAC 184 | 549 TAIR9 244928_s_at LL_LLHC 23 0.495186 5.674380 6.075920 5.422470 3.944830 6.809640 5.430350 6.168900 7.055250 6.794540 6.476170 7.337280 7.488000 21.307409 0.162697
TAIR:AT2G07717 PLACE:S000167 | PLACE:S000192 | PLACE:S000080 | PLACE:S000109 MYBPLANT | ACIPVPAL2 | POLASIG1 | TATABOX2 CACCTACC | CCCACCTACC | AATAAA | TATAAAT 33.5 | 34.5 | 125.5 | 129 TAIR9 244929_at LL_LLHC 19 0.261930 106.979000 113.662000 52.405000 58.988700 83.419600 79.771500 115.071000 110.138000 155.637000 200.465000 155.540000 203.346000 0.362848 6.541650
TAIR:AT2G07809 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 17 | 207.5 TAIR9 244930_at LL_LLHC 7 0.546564 3.538030 2.809070 3.540280 3.608480 3.275540 2.955400 3.575720 3.281720 3.247860 3.396870 3.341310 3.050710 4.525987 0.049080
TAIR:ATMG00630 PLACE:S000483 | PLACE:S000483 SORLIP2AT | SORLIP2AT GGGCC | GGGCC 387 | 428 TAIR9 244931_at LL_LLHC 8 0.817805 5.801360 6.628710 7.069900 5.901670 4.882980 5.376660 5.434470 5.490550 6.393310 6.750010 6.595890 6.262830 2.883395 0.244154
TAIR:ATCG01060 PLACE:S000149 CCA1ATLHCB1 AAAAATCT 80.5 TAIR9 244932_at LL_LLHC 21 0.607053 642.167000 311.869000 540.682000 674.557000 373.022000 965.615000 852.802000 676.204000 969.015000 971.846000 690.309000 1153.110000 23.265055 50.312525
TAIR:ATCG01070 PLACE:S000483 | PLACE:S000477 | PLACE:S000185 SORLIP2AT | ANAERO1CONSENSUS | SURE2STPAT21 GGGCC | AAACAAA | AATACTAAT 90 | 361 | 433 PPDB 244933_at LL_LLHC 21 0.614796 483.293000 320.285000 329.433000 374.417000 385.821000 489.768000 515.999000 434.747000 527.367000 653.053000 474.184000 900.801000 22.759635 48.639218
TAIR:ATCG01080 PLACE:S000185 | PLACE:S000111 | PLACE:S000081 | PLACE:S000111 | PLACE:S000477 SURE2STPAT21 | TATABOX4 | POLASIG2 | TATABOX4 | ANAERO1CONSENSUS AATACTAAT | TATATAA | AATTAAA | TATATAA | AAACAAA 52 | 176 | 198 | 212 | 278 TAIR9 244934_at LL_LLHC 4 0.545162 107.287000 88.592800 93.867300 140.214000 72.679900 94.831900 124.621000 75.359100 106.267000 81.390300 72.193100 117.391000 17.122527 2.215489
TAIR:ATCG01090 PLACE:S000153 LTRECOREATCOR15 CCGAC 288 PPDB 244935_at LL_LLHC 4 0.807673 5872.040000 5193.410000 5285.020000 5349.040000 4700.900000 5695.980000 5410.970000 5417.510000 5542.580000 5762.900000 4864.350000 5749.650000 16.648826 89.092863
TAIR:ATCG01100 PLACE:S000080 POLASIG1 AATAAA 452.5 TAIR9 244936_at LL_LLHC 4 0.616178 1716.180000 1332.890000 1478.830000 1541.280000 1302.090000 1712.330000 1460.410000 1398.430000 1753.990000 1800.320000 1272.880000 1647.080000 2.827159 2.908769
TAIR:ATCG01110 PLACE:S000081 | PLACE:S000053 | PLACE:S000081 | PLACE:S000080 | PLACE:S000081 POLASIG2 | HEXMOTIFTAH3H4 | POLASIG2 | POLASIG1 | POLASIG2 AATTAAA | ACGTCA | AATTAAA | AATAAA | AATTAAA 30 | 110.5 | 381 | 456.5 | 522 TAIR9 244937_at LL_LLHC 21 0.461875 83.979100 37.726400 113.221000 92.146400 76.190400 117.003000 84.918100 70.885400 51.758900 43.507300 38.666900 70.868900 15.915962 4.052211
TAIR:ATCG01120 PLACE:S000081 | PLACE:S000080 | PLACE:S000081 | PLACE:S000111 | PLACE:S000471 POLASIG2 | POLASIG1 | POLASIG2 | TATABOX4 | UP1ATMSD AATTAAA | AATAAA | AATTAAA | TATATAA | GGCCCAATT 11 | 86.5 | 152 | 212 | 349 TAIR9 244938_at LL_LLHC 20 0.541180 232.632000 166.095000 79.728100 130.519000 140.869000 137.356000 190.230000 155.519000 180.512000 273.311000 268.677000 299.520000 22.969103 19.810676
TAIR:ATCG00065 PLACE:S000080 | PLACE:S000080 | PLACE:S000186 | PLACE:S000111 POLASIG1 | POLASIG1 | SURE1STPAT21 | TATABOX4 AATAAA | AATAAA | AATAGAAAA | TATATAA 5.5 | 100.5 | 351 | 546 TAIR9 244939_at LL_LLHC 11 0.556508 183.334000 126.317000 109.669000 215.647000 114.780000 142.519000 126.958000 139.039000 232.270000 206.858000 121.119000 212.377000 5.405099 7.676750
TAIR:ATCG01230 PLACE:S000414 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 ABRELATERD1 | POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 ACGTG | AATAAA | AATAAA | AATAAA | AATAAA 90 | 331.5 | 351.5 | 373.5 | 473.5 TAIR9 244940_at LL_LLHC 21 0.595181 1504.860000 1347.760000 1439.740000 1539.600000 1215.840000 1666.410000 1779.100000 1650.750000 1774.130000 1802.170000 1573.030000 2250.100000 14.867586 48.659356
TAIR:ATMG00010 PLACE:S000080 | PLACE:S000153 POLASIG1 | LTRECOREATCOR15 AATAAA | CCGAC 53.5 | 450 TAIR9 244941_at LL_LLHC 16 0.363462 6.033030 5.002020 5.320220 4.498820 5.746920 5.308440 5.762580 6.516740 5.362530 6.289820 6.464440 5.101950 15.682906 0.053199
TAIR:ATMG00050 PLACE:S000483 | PLACE:S000474 | PLACE:S000081 | PLACE:S000080 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SITEIIATCYTC | POLASIG2 | POLASIG1 | SORLIP2AT | SITEIIATCYTC GGGCC | TGGGCC | AATTAAA | AATAAA | GGGCC | TGGGCT 248 | 248.5 | 287 | 411.5 | 435 | 478.5 TAIR9 244942_at LL_LLHC 20 0.365776 3.141770 3.417390 2.997520 3.032240 3.170850 3.359200 3.692330 3.387430 3.345450 3.906940 3.596820 3.395460 22.653351 0.028802
TAIR:ATMG00070 PLACE:S000483 SORLIP2AT GGGCC 212 PPDB 244943_at LL_LLHC 20 0.448808 8.532990 6.348810 8.215310 6.529000 7.837420 9.329920 11.725700 9.851650 7.162250 11.622200 12.369700 9.538870 22.939950 0.562642
TAIR:ATMG00110 PLACE:S000111 | PLACE:S000220 | PLACE:S000483 | PLACE:S000153 | PLACE:S000081 TATABOX4 | GRAZMRAB28 | SORLIP2AT | LTRECOREATCOR15 | POLASIG2 TATATAA | CATGCCGCC | GGGCC | CCGAC | AATTAAA 55 | 129 | 217 | 340 | 482 TAIR9 244945_at LL_LLHC 23 0.892640 6.716310 7.637850 5.976200 5.750540 5.929070 6.358010 6.847360 6.719090 5.614620 5.911800 6.802040 7.408340 17.524205 0.319308
TAIR:ATMG00130 PLACE:S000080 POLASIG1 AATAAA 133.5 TAIR9 244947_at LL_LLHC 1 0.464149 4.088480 4.054890 3.975010 3.479790 4.115580 4.025080 4.439330 4.211310 4.175790 4.670330 4.709140 4.743040 22.547326 0.091389
TAIR:ATMG00140 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 134 | 542.5 TAIR9 244948_at LL_LLHC 23 0.630316 5.441970 4.437750 4.682960 4.606810 4.289910 4.549970 5.292020 4.513680 5.344260 4.313690 5.075690 5.283330 17.519863 0.126787
TAIR:ATMG00150 - - - - TAIR9 244949_at LL_LLHC 8 0.483953 3.371290 3.842410 3.461070 3.309660 3.465430 3.629080 3.539610 3.382510 4.030730 4.469830 4.096350 3.590770 6.182913 0.097862
TAIR:ATMG00160 PLACE:S000111 | PLACE:S000483 | PLACE:S000414 | PLACE:S000080 | PLACE:S000167 TATABOX4 | SORLIP2AT | ABRELATERD1 | POLASIG1 | MYBPLANT TATATAA | GGGCC | ACGTG | AATAAA | CACCAACC 61 | 95 | 246 | 292.5 | 409.5 PPDB 244950_at LL_LLHC 0 0.422366 10.940900 10.117500 10.394500 8.123170 9.012040 12.853900 13.204300 9.815750 11.959200 16.960400 13.029600 14.444700 23.700529 0.510596
TAIR:AT2G07723 PLACE:S000414 ABRELATERD1 ACGTG 147 TAIR9 244951_s_at LL_LLHC 19 0.717730 20.513100 21.505600 19.013700 20.541100 15.927500 39.732900 34.268900 23.538200 23.990300 35.548800 47.588200 63.749000 13.071290 5.929388
TAIR:ATMG00260 PLACE:S000081 | PLACE:S000080 POLASIG2 | POLASIG1 AATTAAA | AATAAA 130 | 147.5 TAIR9 244952_at LL_LLHC 15 0.342826 3.980550 3.631750 3.899400 3.930860 4.116450 3.770830 3.217790 3.504500 3.472700 3.283110 3.602640 3.348030 3.776470 0.043265
TAIR:ATMG00270 PLACE:S000474 | PLACE:S000507 SITEIIATCYTC | ABRERATCAL TGGGCT | CACGCGG 283.5 | 332 TAIR9 244953_s_at LL_LLHC 20 0.215917 4.671430 4.519030 4.683360 3.760820 4.854260 4.040900 5.192350 5.608370 5.877660 6.232390 5.266740 7.151440 22.713927 0.047783
TAIR:AT2G07732 PLACE:S000440 CDA1ATCAB2 CAAAACGC 125.5 TAIR9 244954_s_at LL_LLHC 3 0.658684 4.876290 7.009020 5.464000 5.938610 4.973590 5.302900 6.631650 6.761810 4.204230 5.946300 6.129030 5.492400 20.751525 0.168609
TAIR:ATMG00320 PLACE:S000385 | PLACE:S000474 EVENINGAT | SITEIIATCYTC AAAATATCT | TGGGCT 334 | 453.5 TAIR9 244955_at LL_LLHC 17 0.534715 3.751460 3.289510 3.269940 3.524570 3.965280 3.235590 3.639220 3.274990 4.000430 3.932030 3.692640 4.034060 2.195601 0.093958
TAIR:AT2G07737 PLACE:S000472 UP2ATMSD AAACCCTA 17.5 TAIR9 244956_s_at LL_LLHC 0 0.341706 4.596440 4.593680 4.429350 3.941660 4.198290 5.190700 4.629820 5.952230 5.354770 5.471040 4.942790 5.278120 20.400120 0.088414
TAIR:ATMG00400 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 277 TAIR9 244957_at LL_LLHC 20 0.583603 5.099820 4.824550 4.057610 5.038120 5.197620 5.172510 5.670840 6.125420 5.156970 5.207680 5.502070 7.369460 14.731023 0.294093
TAIR:AT2G07703 PLACE:S000460 | PLACE:S000483 | PLACE:S000483 | PLACE:S000474 CTRMCAMV35S | SORLIP2AT | SORLIP2AT | SITEIIATCYTC TCTCTCTCT | GGGCC | GGGCC | TGGGCC 238 | 292 | 332 | 332.5 TAIR9 244958_at LL_LLHC 1 0.447077 4.324860 3.801490 4.397250 3.396800 3.296740 4.257810 3.802280 5.583420 4.092720 4.446080 4.452980 4.120670 21.688907 0.153263
TAIR:ATMG00500 PLACE:S000153 LTRECOREATCOR15 CCGAC 31 TAIR9 244959_s_at LL_LLHC 21 0.692135 16.251900 10.982800 13.657900 7.695540 13.043400 14.375800 16.700900 14.100300 12.744500 12.660800 15.907400 14.531200 16.343204 1.094239
TAIR:ATCG01020 PLACE:S000080 | PLACE:S000111 | PLACE:S000477 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 POLASIG1 | TATABOX4 | ANAERO1CONSENSUS | TATABOX4 | POLASIG1 | POLASIG1 AATAAA | TATATAA | AAACAAA | TATATAA | AATAAA | AATAAA 12.5 | 17 | 311 | 333 | 462.5 | 542.5 TAIR9 244960_at LL_LLHC 8 0.406448 1958.660000 1482.190000 1383.550000 1458.170000 1711.020000 1462.970000 1552.210000 1386.950000 2345.670000 1655.920000 1164.200000 1607.300000 12.432303 47.420212
TAIR:ATCG01040 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000080 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | POLASIG1 AATAAA | TATAAAT | AAAAATCT | AATAAA 177.5 | 334 | 502.5 | 540.5 TAIR9 244961_at LL_LLHC 0 0.528838 5641.520000 5251.190000 3194.900000 3745.820000 4220.460000 4312.130000 4228.410000 4662.000000 5426.910000 4442.190000 3967.560000 5318.980000 18.766190 259.295233
TAIR:ATCG01050 PLACE:S000080 | PLACE:S000149 POLASIG1 | CCA1ATLHCB1 AATAAA | AAAAATCT 19.5 | 458.5 TAIR9 244962_at LL_LLHC 22 0.374630 3220.330000 2360.410000 2081.840000 2617.780000 2578.230000 2932.970000 2935.530000 3111.150000 3129.470000 3410.480000 2592.580000 3037.150000 15.926093 63.983108
TAIR:ATCG00570 PLACE:S000080 POLASIG1 AATAAA 454.5 TAIR9 244963_at LL_LLHC 8 0.476280 3995.770000 3944.780000 5858.480000 4427.800000 4210.900000 5478.870000 5530.220000 5343.030000 5929.150000 6261.370000 5632.310000 5197.010000 5.095597 171.171911
TAIR:ATCG00580 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000477 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | ANAERO1CONSENSUS AATAAA | TATAAAT | AAAAATCT | AAACAAA 193.5 | 319 | 362.5 | 399 TAIR9 244964_at LL_LLHC 8 0.507841 741.868000 852.262000 1277.270000 853.015000 787.399000 1102.430000 1326.470000 1103.680000 1404.670000 1406.000000 1176.260000 1122.020000 3.158590 47.935735
TAIR:ATCG00590 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000063 | PLACE:S000080 | PLACE:S000149 POLASIG1 | POLASIG1 | POLASIG1 | MARABOX1 | POLASIG1 | CCA1ATLHCB1 AATAAA | AATAAA | AATAAA | AATAAATAAA | AATAAA | AAAAATCT 311.5 | 349.5 | 491.5 | 493.5 | 495.5 | 526.5 TAIR9 244965_at LL_LLHC 4 0.327123 1277.640000 1230.510000 903.507000 844.954000 858.231000 859.011000 925.103000 991.953000 1529.260000 1454.870000 968.937000 1814.890000 15.925260 21.525862
TAIR:ATCG00600 - - - - TAIR9 244966_at LL_LLHC 22 0.599758 13.008800 5.812310 12.553400 6.657910 7.708290 8.020110 10.037500 6.320940 8.872970 8.141590 7.738150 15.249300 15.951345 0.728231
TAIR:ATCG00630 PLACE:S000080 | PLACE:S000111 | PLACE:S000081 | PLACE:S000507 | PLACE:S000477 | PLACE:S000081 POLASIG1 | TATABOX4 | POLASIG2 | ABRERATCAL | ANAERO1CONSENSUS | POLASIG2 AATAAA | TATATAA | AATTAAA | AACGCGC | AAACAAA | AATTAAA 14.5 | 29 | 230 | 380 | 385 | 499 PPDB 244967_at LL_LLHC 20 0.422480 4276.980000 3722.910000 3309.740000 3807.780000 3751.430000 3779.160000 3284.430000 3519.260000 5063.240000 4340.270000 3352.330000 5382.020000 0.824140 48.007653
TAIR:ATCG00640 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244968_at LL_LLHC 22 0.639537 1433.680000 1379.310000 1212.260000 1212.030000 1430.610000 2103.080000 1700.930000 1632.950000 1565.430000 1580.040000 1633.950000 1567.070000 21.134210 93.207425
TAIR:ATCG00650 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244969_at LL_LLHC 20 0.562621 965.433000 679.426000 451.038000 629.801000 949.556000 1016.830000 845.355000 1012.980000 969.822000 975.591000 830.752000 1092.970000 14.462862 70.146801
TAIR:ATCG00660 PLACE:S000081 POLASIG2 AATTAAA 222 TAIR9 244970_at LL_LLHC 19 0.502176 222.751000 191.143000 105.736000 147.026000 251.267000 191.630000 244.111000 150.333000 323.837000 460.486000 329.816000 709.617000 0.152565 51.373257
TAIR:ATCG00670 PLACE:S000080 | PLACE:S000404 POLASIG1 | CARGATCONSENSUS AATAAA | CCTTTTTAGG 15.5 | 319.5 TAIR9 244971_at LL_LLHC 0 0.587005 2365.780000 2171.930000 1501.900000 1772.350000 2102.360000 1994.660000 2199.820000 2517.800000 2325.340000 2178.470000 1713.790000 2968.240000 17.468110 136.269005
TAIR:ATCG00680 PLACE:S000404 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000298 CARGATCONSENSUS | POLASIG1 | POLASIG1 | POLASIG1 | PYRIMIDINEBOXHVEPB1 CCTAAAAAGG | AATAAA | AATAAA | AATAAA | TTTTTTCC 9.5 | 222.5 | 247.5 | 259.5 | 323.5 PPDB 244972_at LL_LLHC 3 0.611617 554.163000 726.166000 731.673000 647.524000 478.413000 966.048000 1116.270000 894.473000 964.832000 753.924000 506.698000 577.427000 21.548995 71.039236
TAIR:ATCG00690 PLACE:S000483 | PLACE:S000153 SORLIP2AT | LTRECOREATCOR15 GGGCC | CCGAC 331 | 461 PPDB 244973_at LL_LLHC 2 0.205344 207.213000 165.589000 98.226100 85.516500 113.161000 217.290000 308.016000 352.808000 502.392000 468.868000 354.884000 413.243000 23.789140 1.477163
TAIR:ATCG00700 PLACE:S000109 | PLACE:S000153 TATABOX2 | LTRECOREATCOR15 TATAAAT | CCGAC 198 | 459 TAIR9 244974_at LL_LLHC 0 0.615070 55.783800 40.955400 26.938300 25.265600 44.260200 32.335600 32.900100 45.244200 67.938700 40.613700 14.328600 36.589200 22.200093 4.338384
TAIR:ATCG00710 PLACE:S000477 | PLACE:S000477 ANAERO1CONSENSUS | ANAERO1CONSENSUS AAACAAA | AAACAAA 399 | 410 PPDB 244975_at LL_LLHC 3 0.741084 2800.930000 2016.420000 2731.270000 2323.430000 2111.220000 2480.770000 2588.000000 2724.990000 2556.630000 2166.840000 1780.450000 2478.740000 20.756659 128.696736
TAIR:ATCG00720 - - - - PPDB 244976_at LL_LLHC 2 0.657117 6754.750000 6146.000000 6034.550000 5531.000000 6183.080000 6615.760000 6239.160000 6280.720000 6294.890000 6056.380000 4692.940000 7196.070000 17.922706 243.639464
TAIR:ATCG00730 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 AATAAA | AATAAA | AATAAA | AATAAA 127.5 | 265.5 | 278.5 | 327.5 PPDB 244977_at LL_LLHC 22 0.649102 16.170700 13.027600 21.629200 16.452000 16.005300 24.222700 28.653400 17.497700 16.358400 14.385300 13.381900 19.362900 17.163540 1.481621
TAIR:ATCG00740 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 POLASIG1 | POLASIG1 | POLASIG2 AATAAA | AATAAA | AATTAAA 36.5 | 338.5 | 358 PPDB 244978_at LL_LLHC 0 0.323568 1107.050000 807.006000 744.536000 807.806000 938.023000 975.435000 909.569000 1048.420000 1245.680000 1083.040000 926.495000 1066.280000 19.309834 13.005215
TAIR:ATCG00750 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244979_at LL_LLHC 6 0.430744 632.396000 557.036000 720.292000 681.483000 564.951000 535.492000 538.786000 351.718000 531.388000 412.709000 289.421000 343.537000 0.834879 31.569545
TAIR:ATCG00760 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244980_at LL_LLHC 21 0.425736 440.927000 402.301000 429.731000 368.510000 356.461000 338.415000 386.902000 316.633000 416.730000 388.166000 389.742000 568.875000 15.270230 9.701502
TAIR:ATCG00770 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244981_at LL_LLHC 20 0.439080 241.637000 238.624000 180.905000 156.536000 203.109000 167.051000 200.454000 174.587000 247.484000 335.099000 255.122000 488.013000 23.336566 19.907417
TAIR:ATCG00780 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244982_at LL_LLHC 19 0.514258 353.417000 214.688000 163.838000 297.950000 232.795000 168.101000 186.755000 177.553000 180.401000 303.617000 309.648000 544.713000 12.404800 37.650735
TAIR:ATCG00790 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 | PLACE:S000414 POLASIG1 | POLASIG1 | POLASIG2 | ABRELATERD1 AATAAA | AATAAA | AATTAAA | ACGTG 162.5 | 326.5 | 360 | 540 PPDB 244983_at LL_LLHC 1 0.292390 1456.570000 1518.110000 1209.310000 1401.700000 1151.040000 975.456000 1132.280000 791.131000 946.582000 1067.730000 879.814000 1287.340000 19.696618 28.800040
TAIR:ATCG00800 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244984_at LL_LLHC 0 0.558065 2849.700000 1909.090000 1911.150000 2057.550000 2150.970000 2155.510000 1920.580000 1788.630000 2167.880000 1912.870000 1761.380000 1777.790000 18.366671 51.878846
TAIR:ATCG00810 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244985_at LL_LLHC 23 0.618925 3013.140000 1437.970000 2384.780000 1884.650000 1882.190000 2138.060000 1897.870000 1578.430000 1653.240000 1448.020000 1507.880000 1775.110000 17.386049 112.202916
TAIR:ATCG00820 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244986_at LL_LLHC 0 0.565202 2185.060000 1340.970000 1388.020000 1493.710000 1405.000000 1141.810000 1381.180000 1139.120000 1731.780000 1478.970000 1064.050000 1217.870000 22.789537 58.570089
TAIR:ATCG01310 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244987_s_at LL_LLHC 1 0.659239 3616.970000 3279.570000 2750.520000 2931.960000 3257.140000 2932.660000 3420.590000 3125.460000 3385.210000 3286.500000 3064.060000 3193.210000 18.360947 71.660120
TAIR:ATCG00840 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244988_s_at LL_LLHC 22 0.577645 2366.290000 1325.750000 1546.860000 1931.920000 1925.900000 1773.650000 1885.180000 1752.470000 1946.340000 1969.300000 1712.730000 2719.550000 22.475228 122.222214
TAIR:ATCG01280 - - - - TAIR9 244989_s_at LL_LLHC 1 0.867741 13.884000 9.446760 9.277500 7.039160 9.166560 8.966030 11.341600 9.836300 7.627410 8.914000 8.679790 9.292790 18.025675 0.888999
TAIR:ATCG01270 PLACE:S000111 TATABOX4 TATATAA 294 TAIR9 244990_s_at LL_LLHC 20 0.478307 41.355200 29.806800 21.053400 17.404800 32.947800 27.123900 38.626800 47.772400 64.157500 42.911700 45.691200 109.126000 14.980267 5.290053
* Row count is limited to 100.