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DIURNAL gene expression + PLACE promoter motif

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the various sizes of motifs predicted by PLACE (Plant Cis-acting Regulatory DNA Elements) database. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE):
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_PLACE_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PLACE_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PLACE_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PLACE_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PLACE_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PLACE_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PLACE_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://www.dna.affrc.go.jp/PLACE/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PLACE_lhyox_SD
#download_from http://linkdata.org/work/rdf1s746i
#namespace ATTED http://atted.jp/data/locus/
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif name motif sequence motif position Origin of baseline sequence Probe Condition Phase Correlation label:lhyox_SD_0_hours label:lhyox_SD_4_hours label:lhyox_SD_8_hours label:lhyox_SD_12_hours label:lhyox_SD_16_hours label:lhyox_SD_20_hours label:lhyox_SD_24_hours label:lhyox_SD_28_hours label:lhyox_SD_32_hours label:lhyox_SD_36_hours label:lhyox_SD_40_hours label:lhyox_SD_44_hours Sine Phase Sine Amplitude
#object_type_xsd string string string string string string string string string string string string string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
TAIR:ATMG00640 PLACE:S000483 SORLIP2AT GGGCC 79 PPDB 244901_at lhyox_SD 4 0.839448 5.899000 9.452790 5.996220 5.670130 7.048990 6.825140 5.881540 8.541760 6.260510 5.502910 7.647130 6.898700 16.137304 0.282068
TAIR:ATMG00650 PLACE:S000394 | PLACE:S000414 | PLACE:S000483 | PLACE:S000153 ACGTABREMOTIFA2OSEM | ABRELATERD1 | SORLIP2AT | LTRECOREATCOR15 ACGTGTC | ACGTG | GGGCC | CCGAC 77 | 78 | 101 | 159 TAIR9 244902_at lhyox_SD 12 0.813807 6.632720 7.095820 7.354220 7.957960 7.011340 6.906110 6.913740 6.814040 6.641290 7.917260 7.123660 7.527810 6.966619 0.191269
TAIR:ATMG00660 PLACE:S000483 | PLACE:S000474 | PLACE:S000474 | PLACE:S000167 | PLACE:S000507 SORLIP2AT | SITEIIATCYTC | SITEIIATCYTC | MYBPLANT | ABRERATCAL GGGCC | TGGGCC | TGGGCT | AACCAACC | AACGCGG 212 | 212.5 | 217.5 | 303.5 | 531 TAIR9 244903_at lhyox_SD 4 0.885674 9.247100 8.292440 8.609210 8.384630 6.793730 9.448270 8.635790 8.751280 9.452850 8.860250 6.220040 9.948250 15.659325 0.338225
TAIR:ATMG00670 PLACE:S000477 | PLACE:S000111 | PLACE:S000111 | PLACE:S000477 ANAERO1CONSENSUS | TATABOX4 | TATABOX4 | ANAERO1CONSENSUS AAACAAA | TATATAA | TATATAA | AAACAAA 98 | 155 | 212 | 398 TAIR9 244904_at lhyox_SD 16 0.830417 6.866320 5.655470 7.512340 6.677850 6.987660 7.117870 7.466320 5.704890 7.434930 6.423900 6.588240 6.943590 10.965362 0.099596
TAIR:ATMG00680 PLACE:S000153 LTRECOREATCOR15 CCGAC 478 TAIR9 244905_at lhyox_SD 2 0.863083 3.316600 3.295060 3.413250 2.974380 3.065620 3.544760 3.601880 3.424610 3.484830 2.987250 3.225530 3.355890 19.164381 0.102422
TAIR:ATMG00690 PLACE:S000080 | PLACE:S000200 POLASIG1 | HBOXCONSENSUSPVCHS AATAAA | CCTACCTTAGAATCT 343.5 | 540 TAIR9 244906_at lhyox_SD 19 0.830701 6.375010 9.141700 6.357960 6.799140 9.474990 10.546500 6.279490 8.945780 6.679280 6.908850 9.120640 11.411600 13.407464 0.729442
TAIR:ATMG00710 - - - - TAIR9 244907_at lhyox_SD 23 0.814384 4.700560 3.455240 3.759870 4.008080 3.348090 4.302170 4.760850 3.314750 4.019210 4.198250 3.662420 4.367060 20.119323 0.154894
TAIR:ATMG00720 - - - - TAIR9 244908_at lhyox_SD 13 0.842564 3.660150 3.434800 3.644990 4.124930 3.740670 3.445960 3.807450 3.448620 3.782210 4.299010 4.001690 3.323750 6.387334 0.143617
TAIR:ATMG00740 PLACE:S000477 | PLACE:S000507 | PLACE:S000477 ANAERO1CONSENSUS | ABRERATCAL | ANAERO1CONSENSUS AAACAAA | AACGTGG | AAACAAA 72 | 103 | 126 TAIR9 244909_at lhyox_SD 13 0.658796 2.593230 2.592420 2.957450 2.642840 2.626400 2.790510 2.392970 2.789900 2.894500 2.783260 2.820630 2.611430 7.704922 0.064416
TAIR:ATMG00750 PLACE:S000507 | PLACE:S000474 ABRERATCAL | SITEIIATCYTC CACGCGG | TGGGCT 332 | 361.5 TAIR9 244910_s_at lhyox_SD 12 0.645216 4.163630 3.709060 3.851890 4.259810 3.812110 3.841780 4.446340 3.660370 3.987400 4.587850 3.571730 3.568140 8.534895 0.048617
TAIR:AT2G07783 PLACE:S000149 CCA1ATLHCB1 AACAATCT 317.5 TAIR9 244912_at lhyox_SD 17 0.827000 28.238900 45.585800 26.033400 31.584900 62.155400 49.754500 28.870800 49.927900 25.076600 28.706700 61.950800 45.407300 12.275639 5.256331
TAIR:ATMG00840 PLACE:S000426 UPRMOTIFIIAT CCCAGAGTAGCCAACCACG 107 TAIR9 244913_at lhyox_SD 11 0.769240 3.315550 3.405440 3.468440 3.476660 3.557780 3.004390 3.248780 3.154740 3.766160 3.471510 3.350360 3.270090 4.196146 0.097120
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244914_at lhyox_SD 15 0.457651 4.508850 4.124960 4.357550 4.048140 4.311000 4.575740 4.203410 4.136450 4.791370 4.451680 4.163220 4.554320 13.993683 0.016147
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244915_s_at lhyox_SD 1 0.813659 5.217860 4.466630 4.116030 4.253920 4.452170 4.305130 4.791490 4.385340 4.220540 3.904280 4.630220 4.030940 18.436287 0.145589
TAIR:ATMG00880 PLACE:S000474 SITEIIATCYTC TGGGCT 409.5 TAIR9 244916_at lhyox_SD 10 0.719138 2.954700 3.546690 3.014470 3.214050 3.281060 2.948980 2.833770 3.376350 2.970950 3.457470 3.399360 2.982540 4.797666 0.069120
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244917_at lhyox_SD 1 0.921605 4.010810 3.777920 3.412930 3.363880 3.430130 3.157660 4.163750 3.544760 3.301380 3.542060 3.322580 3.168960 20.092017 0.132727
TAIR:ATMG00960 PLACE:S000507 ABRERATCAL AACGCGG 301 TAIR9 244919_at lhyox_SD 19 0.822382 4.574780 3.943800 4.278790 4.099710 4.417390 4.612310 4.222860 4.102170 4.280300 4.149100 4.666390 4.714170 12.987958 0.134762
TAIR:ATMG00990 PLACE:S000483 | PLACE:S000483 | PLACE:S000071 | PLACE:S000483 | PLACE:S000474 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SORLIP2AT | NONAMERMOTIFTAH3H4 | SORLIP2AT | SITEIIATCYTC | SORLIP2AT | SITEIIATCYTC GGGCC | GGGCC | CATCCAACG | GGGCC | TGGGCC | GGGCC | TGGGCC 93 | 176 | 230 | 402 | 402.5 | 450 | 450.5 TAIR9 244920_s_at lhyox_SD 15 0.726187 39.510100 39.879500 35.380800 38.466900 42.944300 34.003500 40.759200 38.965400 33.171300 40.865000 44.801400 37.129000 11.159900 0.849037
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244921_s_at lhyox_SD 17 0.656779 15.743000 31.660300 16.873600 23.393200 32.292400 25.539400 14.886600 29.618500 18.157800 25.094800 35.325600 25.015200 2.334564 1.926552
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244922_s_at lhyox_SD 8 0.566581 5.252200 4.994500 5.347630 4.387310 5.247460 4.609010 5.625250 5.470530 4.837310 4.546390 5.575210 4.262200 15.548746 0.115271
TAIR:ATMG01020 PLACE:S000477 | PLACE:S000111 ANAERO1CONSENSUS | TATABOX4 AAACAAA | TATATAA 95 | 159 TAIR9 244923_s_at lhyox_SD 9 0.889438 7.864070 7.833920 7.777390 7.539520 8.298450 6.341970 7.172590 8.228900 8.144900 7.990130 8.318030 6.806280 3.218785 0.240796
TAIR:ATMG01040 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 376 TAIR9 244924_at lhyox_SD 20 0.829938 4.548860 3.963030 3.439300 4.044440 4.876330 4.456120 4.729930 3.591230 3.761990 3.743200 5.262830 4.052770 12.946139 0.289761
TAIR:ATMG00510 PLACE:S000477 | PLACE:S000111 | PLACE:S000081 | PLACE:S000186 ANAERO1CONSENSUS | TATABOX4 | POLASIG2 | SURE1STPAT21 AAACAAA | TATATAA | AATTAAA | AATAGAAAA 151 | 293 | 408 | 414 TAIR9 244925_at lhyox_SD 22 0.908350 17.066200 13.138700 14.639300 12.048400 13.808800 17.102000 18.705900 12.993200 14.142700 11.813800 14.778900 18.408500 16.031922 1.345158
TAIR:ATMG00520 PLACE:S000153 | PLACE:S000426 | PLACE:S000080 LTRECOREATCOR15 | UPRMOTIFIIAT | POLASIG1 CCGAC | CCTTTCACCTCTTCCCACG | AATAAA 179 | 357 | 516.5 TAIR9 244926_s_at lhyox_SD 20 0.791282 3.231870 3.273450 3.427420 3.083020 3.115830 3.970490 3.331980 3.479000 3.313830 2.969800 2.949640 3.651630 17.507455 0.108816
TAIR:ATMG00530 PLACE:S000483 | PLACE:S000474 | PLACE:S000414 SORLIP2AT | SITEIIATCYTC | ABRELATERD1 GGGCC | TGGGCC | ACGTG 172 | 172.5 | 458 TAIR9 244927_at lhyox_SD 12 0.870601 3.942000 4.882850 4.663390 4.707490 5.038880 5.240160 3.755650 5.327730 4.600850 4.828780 4.669420 4.946580 7.193821 0.098631
TAIR:ATMG00570 PLACE:S000111 | PLACE:S000153 TATABOX4 | LTRECOREATCOR15 TATATAA | CCGAC 184 | 549 TAIR9 244928_s_at lhyox_SD 21 0.748025 4.838930 5.480240 4.472720 5.317500 6.138080 5.650400 5.177850 5.848730 4.628250 5.172600 6.144820 5.601390 23.822375 0.224309
TAIR:AT2G07717 PLACE:S000167 | PLACE:S000192 | PLACE:S000080 | PLACE:S000109 MYBPLANT | ACIPVPAL2 | POLASIG1 | TATABOX2 CACCTACC | CCCACCTACC | AATAAA | TATAAAT 33.5 | 34.5 | 125.5 | 129 TAIR9 244929_at lhyox_SD 16 0.783286 242.217000 264.733000 184.090000 230.393000 326.492000 165.428000 239.207000 266.938000 199.616000 221.381000 334.928000 159.443000 3.097814 7.430317
TAIR:AT2G07809 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 17 | 207.5 TAIR9 244930_at lhyox_SD 22 0.738648 4.068760 3.298070 2.711100 2.582810 3.572390 2.892370 3.915100 3.192270 2.549890 2.438050 3.740590 2.743200 16.617740 0.244054
TAIR:ATMG00630 PLACE:S000483 | PLACE:S000483 SORLIP2AT | SORLIP2AT GGGCC | GGGCC 387 | 428 TAIR9 244931_at lhyox_SD 12 0.799949 2.830180 3.990820 3.273000 3.795330 4.031790 3.986940 3.012930 4.211910 3.447010 4.084900 3.828010 3.726530 7.491294 0.123360
TAIR:ATCG01060 PLACE:S000149 CCA1ATLHCB1 AAAAATCT 80.5 TAIR9 244932_at lhyox_SD 12 0.820659 133.989000 546.380000 353.460000 513.789000 733.595000 641.353000 124.334000 501.979000 372.010000 529.255000 705.763000 585.057000 9.108525 88.553271
TAIR:ATCG01070 PLACE:S000483 | PLACE:S000477 | PLACE:S000185 SORLIP2AT | ANAERO1CONSENSUS | SURE2STPAT21 GGGCC | AAACAAA | AATACTAAT 90 | 361 | 433 PPDB 244933_at lhyox_SD 16 0.731745 200.676000 472.613000 248.689000 417.549000 606.862000 486.580000 188.527000 453.366000 266.007000 434.630000 583.569000 529.706000 10.170943 62.290284
TAIR:ATCG01080 PLACE:S000185 | PLACE:S000111 | PLACE:S000081 | PLACE:S000111 | PLACE:S000477 SURE2STPAT21 | TATABOX4 | POLASIG2 | TATABOX4 | ANAERO1CONSENSUS AATACTAAT | TATATAA | AATTAAA | TATATAA | AAACAAA 52 | 176 | 198 | 212 | 278 TAIR9 244934_at lhyox_SD 15 0.844032 19.569400 40.630700 33.404300 49.801300 63.013900 48.449700 18.154000 42.663300 31.961100 53.145600 63.194100 49.519900 8.860030 8.006234
TAIR:ATCG01090 PLACE:S000153 LTRECOREATCOR15 CCGAC 288 PPDB 244935_at lhyox_SD 16 0.949361 5053.880000 5477.440000 5181.610000 6309.860000 6238.200000 6565.080000 5260.200000 5146.140000 5104.510000 5991.680000 6029.920000 6147.370000 10.375726 322.511915
TAIR:ATCG01100 PLACE:S000080 POLASIG1 AATAAA 452.5 TAIR9 244936_at lhyox_SD 13 0.949519 799.422000 1670.260000 1801.600000 2140.280000 1972.650000 2185.950000 850.353000 1821.750000 1758.030000 2177.590000 2167.260000 1967.600000 7.450266 241.811319
TAIR:ATCG01110 PLACE:S000081 | PLACE:S000053 | PLACE:S000081 | PLACE:S000080 | PLACE:S000081 POLASIG2 | HEXMOTIFTAH3H4 | POLASIG2 | POLASIG1 | POLASIG2 AATTAAA | ACGTCA | AATTAAA | AATAAA | AATTAAA 30 | 110.5 | 381 | 456.5 | 522 TAIR9 244937_at lhyox_SD 13 0.894753 13.958400 78.152500 78.464900 126.793000 139.381000 119.607000 12.846000 84.121400 75.561600 125.147000 134.200000 125.467000 8.445443 24.446703
TAIR:ATCG01120 PLACE:S000081 | PLACE:S000080 | PLACE:S000081 | PLACE:S000111 | PLACE:S000471 POLASIG2 | POLASIG1 | POLASIG2 | TATABOX4 | UP1ATMSD AATTAAA | AATAAA | AATTAAA | TATATAA | GGCCCAATT 11 | 86.5 | 152 | 212 | 349 TAIR9 244938_at lhyox_SD 4 0.579586 303.121000 378.116000 297.649000 318.804000 348.432000 291.088000 321.169000 343.665000 279.986000 302.154000 370.481000 291.356000 18.879560 0.613740
TAIR:ATCG00065 PLACE:S000080 | PLACE:S000080 | PLACE:S000186 | PLACE:S000111 POLASIG1 | POLASIG1 | SURE1STPAT21 | TATABOX4 AATAAA | AATAAA | AATAGAAAA | TATATAA 5.5 | 100.5 | 351 | 546 TAIR9 244939_at lhyox_SD 17 0.935786 162.514000 174.996000 63.571800 127.178000 415.857000 199.514000 151.149000 185.052000 59.070500 136.365000 427.627000 181.350000 11.629555 53.777238
TAIR:ATCG01230 PLACE:S000414 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 ABRELATERD1 | POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 ACGTG | AATAAA | AATAAA | AATAAA | AATAAA 90 | 331.5 | 351.5 | 373.5 | 473.5 TAIR9 244940_at lhyox_SD 21 0.852585 949.149000 1125.780000 540.224000 986.956000 1417.630000 1120.810000 946.572000 1047.040000 513.729000 954.506000 1332.150000 1028.140000 23.441390 121.965029
TAIR:ATMG00010 PLACE:S000080 | PLACE:S000153 POLASIG1 | LTRECOREATCOR15 AATAAA | CCGAC 53.5 | 450 TAIR9 244941_at lhyox_SD 19 0.795351 3.332580 3.879940 3.852830 3.456540 4.118350 4.387130 3.272050 3.798090 4.147640 3.253050 3.999160 4.784800 12.706511 0.118277
TAIR:ATMG00050 PLACE:S000483 | PLACE:S000474 | PLACE:S000081 | PLACE:S000080 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SITEIIATCYTC | POLASIG2 | POLASIG1 | SORLIP2AT | SITEIIATCYTC GGGCC | TGGGCC | AATTAAA | AATAAA | GGGCC | TGGGCT 248 | 248.5 | 287 | 411.5 | 435 | 478.5 TAIR9 244942_at lhyox_SD 8 0.740648 3.627590 3.183620 3.138520 3.185950 3.322140 2.667900 3.510100 3.433940 3.120770 3.055830 3.555950 2.878690 15.084425 0.047204
TAIR:ATMG00070 PLACE:S000483 SORLIP2AT GGGCC 212 PPDB 244943_at lhyox_SD 23 0.936674 6.642920 6.556290 5.728980 4.555030 7.506430 7.138330 7.148320 6.903050 5.659540 4.522200 7.639400 7.386790 20.501492 0.571487
TAIR:ATMG00110 PLACE:S000111 | PLACE:S000220 | PLACE:S000483 | PLACE:S000153 | PLACE:S000081 TATABOX4 | GRAZMRAB28 | SORLIP2AT | LTRECOREATCOR15 | POLASIG2 TATATAA | CATGCCGCC | GGGCC | CCGAC | AATTAAA 55 | 129 | 217 | 340 | 482 TAIR9 244945_at lhyox_SD 9 0.975484 3.647070 4.019070 4.026430 3.957860 3.822790 2.755830 3.652510 3.857390 4.077770 4.042780 3.891680 2.999560 9.364556 0.234938
TAIR:ATMG00130 PLACE:S000080 POLASIG1 AATAAA 133.5 TAIR9 244947_at lhyox_SD 8 0.678204 3.991050 3.344700 4.180440 3.629730 3.700310 3.153400 4.118680 3.161060 4.405070 3.512940 3.755040 3.278890 1.951638 0.099583
TAIR:ATMG00140 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 134 | 542.5 TAIR9 244948_at lhyox_SD 13 0.765462 3.343110 3.412530 3.309250 3.430310 3.385410 3.158900 3.129170 3.104490 3.219240 3.733500 3.285030 3.124170 6.340677 0.074542
TAIR:ATMG00150 - - - - TAIR9 244949_at lhyox_SD 12 0.772424 3.609820 3.039880 3.234290 3.925420 3.322320 3.491990 3.290880 3.198450 2.939350 4.055600 3.308180 3.704210 9.867698 0.120373
TAIR:ATMG00160 PLACE:S000111 | PLACE:S000483 | PLACE:S000414 | PLACE:S000080 | PLACE:S000167 TATABOX4 | SORLIP2AT | ABRELATERD1 | POLASIG1 | MYBPLANT TATATAA | GGGCC | ACGTG | AATAAA | CACCAACC 61 | 95 | 246 | 292.5 | 409.5 PPDB 244950_at lhyox_SD 4 0.836518 6.794200 16.394300 8.641990 8.564160 13.397700 8.130860 7.274140 16.654100 8.070580 9.074270 12.224800 8.514700 23.935635 0.540831
TAIR:AT2G07723 PLACE:S000414 ABRELATERD1 ACGTG 147 TAIR9 244951_s_at lhyox_SD 19 0.825591 10.031700 12.873900 12.223300 9.897140 13.123000 15.236500 9.719440 13.382900 11.429600 10.191600 13.468400 16.217900 13.715448 0.651808
TAIR:ATMG00260 PLACE:S000081 | PLACE:S000080 POLASIG2 | POLASIG1 AATTAAA | AATAAA 130 | 147.5 TAIR9 244952_at lhyox_SD 1 0.972813 5.672310 4.162510 3.771930 3.588960 3.298020 3.606620 6.092660 4.521510 3.628660 3.932310 3.462790 3.291910 19.531622 0.448425
TAIR:ATMG00270 PLACE:S000474 | PLACE:S000507 SITEIIATCYTC | ABRERATCAL TGGGCT | CACGCGG 283.5 | 332 TAIR9 244953_s_at lhyox_SD 4 0.826787 3.806380 7.011250 4.429510 4.570180 5.542540 4.297600 3.503660 7.186810 4.864350 4.807750 5.900700 4.704970 1.172412 0.230612
TAIR:AT2G07732 PLACE:S000440 CDA1ATCAB2 CAAAACGC 125.5 TAIR9 244954_s_at lhyox_SD 23 0.916704 5.988160 4.008830 4.127320 4.342810 4.021090 4.716780 5.430740 4.029840 4.335190 4.601910 3.707160 5.006030 17.055724 0.280145
TAIR:ATMG00320 PLACE:S000385 | PLACE:S000474 EVENINGAT | SITEIIATCYTC AAAATATCT | TGGGCT 334 | 453.5 TAIR9 244955_at lhyox_SD 21 0.861005 3.605280 3.529010 2.646420 3.295940 3.295160 3.518740 3.729470 3.380990 2.631980 2.981440 3.075800 3.283210 16.519620 0.187999
TAIR:AT2G07737 PLACE:S000472 UP2ATMSD AAACCCTA 17.5 TAIR9 244956_s_at lhyox_SD 12 0.857309 3.597220 4.089010 4.006830 4.263500 4.213150 4.121020 3.835050 4.027180 4.135290 4.586980 4.140970 3.836880 6.109019 0.135829
TAIR:ATMG00400 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 277 TAIR9 244957_at lhyox_SD 23 0.927255 5.767870 4.621780 4.332960 4.100210 4.713480 4.971400 5.747710 4.849710 4.481360 4.238310 4.248400 5.342480 17.227584 0.355719
TAIR:AT2G07703 PLACE:S000460 | PLACE:S000483 | PLACE:S000483 | PLACE:S000474 CTRMCAMV35S | SORLIP2AT | SORLIP2AT | SITEIIATCYTC TCTCTCTCT | GGGCC | GGGCC | TGGGCC 238 | 292 | 332 | 332.5 TAIR9 244958_at lhyox_SD 13 0.916284 3.590900 3.589270 3.368220 4.120140 3.675960 3.456740 3.665010 3.413430 3.468590 4.478060 3.721790 3.225230 6.488654 0.135880
TAIR:ATMG00500 PLACE:S000153 LTRECOREATCOR15 CCGAC 31 TAIR9 244959_s_at lhyox_SD 17 0.969692 6.544580 7.717890 6.899100 6.034850 12.724500 8.383330 6.818710 7.665190 6.973700 6.448010 13.331200 7.852510 10.921704 0.979540
TAIR:ATCG01020 PLACE:S000080 | PLACE:S000111 | PLACE:S000477 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 POLASIG1 | TATABOX4 | ANAERO1CONSENSUS | TATABOX4 | POLASIG1 | POLASIG1 AATAAA | TATATAA | AAACAAA | TATATAA | AATAAA | AATAAA 12.5 | 17 | 311 | 333 | 462.5 | 542.5 TAIR9 244960_at lhyox_SD 0 0.825041 3345.420000 1998.820000 2515.220000 2673.870000 2413.450000 2407.360000 3341.630000 2028.680000 2433.900000 2864.590000 2627.840000 2404.990000 21.530226 79.300650
TAIR:ATCG01040 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000080 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | POLASIG1 AATAAA | TATAAAT | AAAAATCT | AATAAA 177.5 | 334 | 502.5 | 540.5 TAIR9 244961_at lhyox_SD 22 0.724846 2095.170000 1068.450000 1511.110000 1843.090000 785.167000 2057.330000 1946.720000 1161.030000 1419.040000 1856.650000 756.872000 2049.740000 16.773366 111.915468
TAIR:ATCG01050 PLACE:S000080 | PLACE:S000149 POLASIG1 | CCA1ATLHCB1 AATAAA | AAAAATCT 19.5 | 458.5 TAIR9 244962_at lhyox_SD 12 0.739684 1252.550000 3042.270000 1907.360000 2649.010000 3455.800000 2718.330000 1238.120000 2988.460000 1747.650000 2521.300000 3580.730000 2983.950000 9.384515 284.456085
TAIR:ATCG00570 PLACE:S000080 POLASIG1 AATAAA 454.5 TAIR9 244963_at lhyox_SD 10 0.923072 2757.130000 4245.320000 4542.910000 4553.460000 4281.110000 3500.190000 2694.610000 4381.070000 4755.990000 4746.960000 3985.660000 3165.430000 4.168696 468.251756
TAIR:ATCG00580 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000477 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | ANAERO1CONSENSUS AATAAA | TATAAAT | AAAAATCT | AAACAAA 193.5 | 319 | 362.5 | 399 TAIR9 244964_at lhyox_SD 12 0.950654 1254.380000 2384.750000 2247.770000 2499.780000 2270.390000 2274.960000 1136.740000 2224.900000 2082.160000 2522.890000 2376.280000 2079.980000 6.077786 219.841833
TAIR:ATCG00590 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000063 | PLACE:S000080 | PLACE:S000149 POLASIG1 | POLASIG1 | POLASIG1 | MARABOX1 | POLASIG1 | CCA1ATLHCB1 AATAAA | AATAAA | AATAAA | AATAAATAAA | AATAAA | AAAAATCT 311.5 | 349.5 | 491.5 | 493.5 | 495.5 | 526.5 TAIR9 244965_at lhyox_SD 11 0.713417 498.949000 846.805000 564.143000 870.696000 998.290000 641.664000 498.395000 931.395000 606.872000 855.961000 907.038000 660.626000 7.140266 63.407652
TAIR:ATCG00600 - - - - TAIR9 244966_at lhyox_SD 12 0.976760 37.600000 85.365900 103.418000 135.090000 109.798000 66.626300 34.050400 79.258900 100.125000 124.445000 100.874000 65.612700 6.337973 20.627376
TAIR:ATCG00630 PLACE:S000080 | PLACE:S000111 | PLACE:S000081 | PLACE:S000507 | PLACE:S000477 | PLACE:S000081 POLASIG1 | TATABOX4 | POLASIG2 | ABRERATCAL | ANAERO1CONSENSUS | POLASIG2 AATAAA | TATATAA | AATTAAA | AACGCGC | AAACAAA | AATTAAA 14.5 | 29 | 230 | 380 | 385 | 499 PPDB 244967_at lhyox_SD 16 0.751996 3305.510000 4856.170000 3668.550000 5067.620000 5048.960000 4755.890000 3338.020000 4710.710000 3915.870000 5171.350000 5304.610000 4730.780000 3.501732 318.962914
TAIR:ATCG00640 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244968_at lhyox_SD 11 0.955887 1489.250000 1665.780000 2192.360000 2650.380000 1612.430000 1840.460000 1632.110000 1775.660000 2116.710000 2861.520000 1768.780000 1912.610000 5.237676 224.321369
TAIR:ATCG00650 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244969_at lhyox_SD 11 0.947889 1065.400000 1147.750000 1277.830000 1628.950000 1096.040000 1036.480000 1120.890000 1060.260000 1259.930000 1467.530000 1157.050000 975.132000 4.719447 105.525044
TAIR:ATCG00660 PLACE:S000081 POLASIG2 AATTAAA 222 TAIR9 244970_at lhyox_SD 16 0.840263 216.626000 388.518000 205.166000 224.670000 490.128000 242.465000 220.390000 385.909000 214.972000 236.031000 530.100000 226.131000 10.290169 23.557315
TAIR:ATCG00670 PLACE:S000080 | PLACE:S000404 POLASIG1 | CARGATCONSENSUS AATAAA | CCTTTTTAGG 15.5 | 319.5 TAIR9 244971_at lhyox_SD 15 0.817674 2119.790000 3212.000000 2439.540000 3229.650000 3927.910000 2937.320000 2120.200000 2926.520000 2213.180000 3311.290000 3955.830000 3007.780000 9.076465 303.999491
TAIR:ATCG00680 PLACE:S000404 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000298 CARGATCONSENSUS | POLASIG1 | POLASIG1 | POLASIG1 | PYRIMIDINEBOXHVEPB1 CCTAAAAAGG | AATAAA | AATAAA | AATAAA | TTTTTTCC 9.5 | 222.5 | 247.5 | 259.5 | 323.5 PPDB 244972_at lhyox_SD 11 0.757325 37.918700 392.762000 187.205000 236.659000 443.343000 204.200000 34.749900 396.944000 195.759000 215.153000 453.914000 212.026000 7.088497 36.148502
TAIR:ATCG00690 PLACE:S000483 | PLACE:S000153 SORLIP2AT | LTRECOREATCOR15 GGGCC | CCGAC 331 | 461 PPDB 244973_at lhyox_SD 16 0.876457 107.774000 159.547000 138.681000 137.975000 223.712000 146.938000 114.754000 167.121000 144.608000 147.343000 211.630000 140.554000 3.309365 12.579408
TAIR:ATCG00700 PLACE:S000109 | PLACE:S000153 TATABOX2 | LTRECOREATCOR15 TATAAAT | CCGAC 198 | 459 TAIR9 244974_at lhyox_SD 13 0.891465 5.121770 28.150100 23.849200 36.894400 37.560100 31.061800 5.149420 25.486200 22.862800 38.791300 36.590200 30.577200 7.615146 6.232966
TAIR:ATCG00710 PLACE:S000477 | PLACE:S000477 ANAERO1CONSENSUS | ANAERO1CONSENSUS AAACAAA | AAACAAA 399 | 410 PPDB 244975_at lhyox_SD 11 0.948529 379.184000 1786.070000 1413.250000 1689.550000 1620.220000 1302.910000 398.882000 1865.550000 1328.670000 1790.040000 1594.290000 1379.890000 5.352930 212.418042
TAIR:ATCG00720 - - - - PPDB 244976_at lhyox_SD 11 0.953726 3963.940000 6201.630000 5325.550000 5814.080000 5469.710000 5008.540000 3596.880000 5820.360000 5741.180000 5976.410000 5958.270000 5252.670000 4.958728 375.138151
TAIR:ATCG00730 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 AATAAA | AATAAA | AATAAA | AATAAA 127.5 | 265.5 | 278.5 | 327.5 PPDB 244977_at lhyox_SD 22 0.802946 5.565240 6.629810 4.375590 4.378410 7.481440 5.970230 5.114950 6.357010 4.342120 4.029300 8.069050 6.138550 22.165712 0.484551
TAIR:ATCG00740 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 POLASIG1 | POLASIG1 | POLASIG2 AATAAA | AATAAA | AATTAAA 36.5 | 338.5 | 358 PPDB 244978_at lhyox_SD 9 0.757285 1562.440000 1670.550000 1670.240000 1834.690000 1556.260000 1421.210000 1557.650000 1742.020000 1537.130000 1878.770000 1561.390000 1324.520000 3.061738 78.494991
TAIR:ATCG00750 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244979_at lhyox_SD 11 0.919635 1741.350000 1719.150000 2168.190000 2386.920000 1632.210000 1931.290000 1854.310000 1570.850000 2106.240000 2437.020000 1700.100000 1741.750000 4.843600 135.332175
TAIR:ATCG00760 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244980_at lhyox_SD 10 0.886567 667.233000 696.605000 824.694000 849.748000 589.348000 694.492000 625.107000 659.659000 762.964000 870.917000 625.455000 721.287000 3.902741 43.330038
TAIR:ATCG00770 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244981_at lhyox_SD 10 0.865615 192.195000 201.327000 451.320000 515.011000 308.944000 373.090000 199.612000 203.664000 460.824000 501.098000 300.419000 346.588000 6.047869 68.565467
TAIR:ATCG00780 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244982_at lhyox_SD 15 0.950215 309.599000 199.208000 351.945000 317.079000 361.252000 322.936000 294.580000 199.694000 376.138000 344.463000 336.116000 317.966000 8.412034 25.829879
TAIR:ATCG00790 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 | PLACE:S000414 POLASIG1 | POLASIG1 | POLASIG2 | ABRELATERD1 AATAAA | AATAAA | AATTAAA | ACGTG 162.5 | 326.5 | 360 | 540 PPDB 244983_at lhyox_SD 16 0.888557 671.591000 474.118000 543.289000 672.092000 836.004000 630.426000 726.945000 459.418000 574.029000 713.118000 837.963000 686.617000 10.832006 71.150411
TAIR:ATCG00800 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244984_at lhyox_SD 10 0.880565 2321.910000 1391.000000 2812.980000 3105.880000 1918.870000 2086.560000 2255.090000 1414.100000 2955.020000 3060.770000 1860.380000 2001.380000 5.210831 248.344399
TAIR:ATCG00810 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244985_at lhyox_SD 10 0.866859 885.804000 455.463000 1729.580000 1949.200000 793.809000 1217.870000 921.268000 445.749000 1593.470000 1871.560000 826.614000 1319.980000 5.921089 230.540319
TAIR:ATCG00820 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244986_at lhyox_SD 13 0.899386 1626.190000 1537.310000 2065.150000 2329.650000 2044.120000 2007.510000 1585.170000 1427.720000 1900.770000 2207.660000 1963.390000 1917.930000 7.661557 171.599862
TAIR:ATCG01310 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244987_s_at lhyox_SD 15 0.881773 4705.390000 4382.480000 4923.860000 5419.390000 5329.930000 5236.170000 4500.660000 4242.790000 5199.790000 5148.040000 5017.520000 4771.870000 8.092655 222.602262
TAIR:ATCG00840 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244988_s_at lhyox_SD 12 0.930578 2127.770000 3272.540000 3142.100000 3615.470000 3548.220000 3225.710000 1988.570000 3030.820000 3073.260000 3422.390000 3575.390000 3314.860000 7.158771 276.722804
TAIR:ATCG01280 - - - - TAIR9 244989_s_at lhyox_SD 18 0.738511 4.988840 4.631170 4.876390 4.483430 5.005180 5.270850 4.573890 5.041390 4.606450 4.089090 5.472650 5.264270 14.313026 0.163049
TAIR:ATCG01270 PLACE:S000111 TATABOX4 TATATAA 294 TAIR9 244990_s_at lhyox_SD 9 0.839184 16.543600 24.283500 37.847800 22.703300 27.799200 12.826100 17.836700 22.476800 39.046300 23.212200 28.233200 13.656600 3.284657 4.550171
* Row count is limited to 100.