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DIURNAL gene expression + PLACE promoter motif

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the various sizes of motifs predicted by PLACE (Plant Cis-acting Regulatory DNA Elements) database. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE):
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_PLACE_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PLACE_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PLACE_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PLACE_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PLACE_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PLACE_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PLACE_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://www.dna.affrc.go.jp/PLACE/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PLACE_lux_2_LDHH
#download_from http://linkdata.org/work/rdf1s746i
#namespace ATTED http://atted.jp/data/locus/
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif name motif sequence motif position Origin of baseline sequence Probe Condition Phase Correlation label:lux-2_LDHH_0_hours label:lux-2_LDHH_4_hours label:lux-2_LDHH_8_hours label:lux-2_LDHH_12_hours label:lux-2_LDHH_16_hours label:lux-2_LDHH_20_hours label:lux-2_LDHH_24_hours label:lux-2_LDHH_28_hours label:lux-2_LDHH_32_hours label:lux-2_LDHH_36_hours label:lux-2_LDHH_40_hours label:lux-2_LDHH_44_hours Sine Phase Sine Amplitude
#object_type_xsd string string string string string string string string string string string string string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
TAIR:ATMG00640 PLACE:S000483 SORLIP2AT GGGCC 79 PPDB 244901_at lux-2_LDHH 5 0.804148 7.112170 5.859480 6.490900 6.228600 4.607140 5.224170 7.010270 5.827350 6.434760 5.826670 5.001610 5.607430 22.021389 0.346563
TAIR:ATMG00650 PLACE:S000394 | PLACE:S000414 | PLACE:S000483 | PLACE:S000153 ACGTABREMOTIFA2OSEM | ABRELATERD1 | SORLIP2AT | LTRECOREATCOR15 ACGTGTC | ACGTG | GGGCC | CCGAC 77 | 78 | 101 | 159 TAIR9 244902_at lux-2_LDHH 20 0.967195 5.671290 5.821670 6.035200 5.342820 5.698260 7.813470 5.105470 5.502750 5.565940 5.610520 5.586840 8.320670 13.897415 0.368887
TAIR:ATMG00660 PLACE:S000483 | PLACE:S000474 | PLACE:S000474 | PLACE:S000167 | PLACE:S000507 SORLIP2AT | SITEIIATCYTC | SITEIIATCYTC | MYBPLANT | ABRERATCAL GGGCC | TGGGCC | TGGGCT | AACCAACC | AACGCGG 212 | 212.5 | 217.5 | 303.5 | 531 TAIR9 244903_at lux-2_LDHH 22 0.956986 11.203000 8.022710 8.080390 7.243700 8.587090 11.323400 12.252200 8.315990 8.148070 6.805130 8.219300 12.448700 16.120615 1.223872
TAIR:ATMG00670 PLACE:S000477 | PLACE:S000111 | PLACE:S000111 | PLACE:S000477 ANAERO1CONSENSUS | TATABOX4 | TATABOX4 | ANAERO1CONSENSUS AAACAAA | TATATAA | TATATAA | AAACAAA 98 | 155 | 212 | 398 TAIR9 244904_at lux-2_LDHH 0 0.853746 6.176390 5.292720 4.293000 4.938010 4.533850 5.158280 6.238920 5.460000 4.157710 4.766180 4.447070 5.459770 17.720958 0.391101
TAIR:ATMG00680 PLACE:S000153 LTRECOREATCOR15 CCGAC 478 TAIR9 244905_at lux-2_LDHH 22 0.953935 4.634950 3.719990 3.802190 3.437270 3.772280 4.513120 4.851200 3.625450 3.608220 3.237790 3.608280 4.689810 16.452165 0.334578
TAIR:ATMG00690 PLACE:S000080 | PLACE:S000200 POLASIG1 | HBOXCONSENSUSPVCHS AATAAA | CCTACCTTAGAATCT 343.5 | 540 TAIR9 244906_at lux-2_LDHH 17 0.852755 6.535140 7.457610 8.508670 6.687290 11.410100 9.621690 7.026450 7.277990 9.327840 6.383150 10.760400 9.340250 10.682475 0.656454
TAIR:ATMG00710 - - - - TAIR9 244907_at lux-2_LDHH 0 0.961498 6.887350 4.138030 5.169550 4.637690 4.291460 4.890330 7.411410 4.537720 4.654520 4.610550 4.560990 4.703470 18.036559 0.403938
TAIR:ATMG00720 - - - - TAIR9 244908_at lux-2_LDHH 23 0.959159 6.260470 3.495520 3.153140 3.542690 3.797600 4.142780 6.668740 3.170000 2.905570 3.839910 3.530210 3.801140 16.685957 0.545112
TAIR:ATMG00740 PLACE:S000477 | PLACE:S000507 | PLACE:S000477 ANAERO1CONSENSUS | ABRERATCAL | ANAERO1CONSENSUS AAACAAA | AACGTGG | AAACAAA 72 | 103 | 126 TAIR9 244909_at lux-2_LDHH 4 0.743067 3.301630 4.105300 2.880790 2.937820 3.293540 3.591950 3.019910 3.698770 3.145180 3.066400 3.576590 3.337870 17.919494 0.103041
TAIR:ATMG00750 PLACE:S000507 | PLACE:S000474 ABRERATCAL | SITEIIATCYTC CACGCGG | TGGGCT 332 | 361.5 TAIR9 244910_s_at lux-2_LDHH 1 0.947174 4.963450 4.637780 4.209580 3.512640 3.551260 4.046770 5.371740 4.797080 4.167890 3.830570 3.266630 3.898510 20.192247 0.405304
TAIR:AT2G07783 PLACE:S000149 CCA1ATLHCB1 AACAATCT 317.5 TAIR9 244912_at lux-2_LDHH 1 0.791691 41.405100 34.378300 23.981900 31.056900 34.481800 28.057100 39.181500 32.517700 21.773100 28.270200 32.177300 30.591600 19.433408 2.492162
TAIR:ATMG00840 PLACE:S000426 UPRMOTIFIIAT CCCAGAGTAGCCAACCACG 107 TAIR9 244913_at lux-2_LDHH 21 0.941446 4.101050 3.431440 3.058690 3.318860 3.731880 4.044290 4.111740 3.658600 3.364000 3.238250 3.851250 3.829590 15.448996 0.226572
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244914_at lux-2_LDHH 0 0.996084 32.252000 5.174800 4.331860 4.964900 5.550500 5.840880 29.269700 5.343890 4.317730 4.556660 5.896160 6.239620 17.729680 4.448770
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244915_s_at lux-2_LDHH 19 0.869885 4.376800 4.134320 3.608860 4.516650 4.111860 4.296220 4.472200 3.984300 3.434840 4.652010 4.001690 4.561970 13.375729 0.139536
TAIR:ATMG00880 PLACE:S000474 SITEIIATCYTC TGGGCT 409.5 TAIR9 244916_at lux-2_LDHH 0 0.924015 5.072890 4.162210 3.684390 3.457740 3.391010 4.088240 4.589150 4.426950 3.611020 3.607130 3.530160 4.359020 18.424335 0.335995
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244917_at lux-2_LDHH 0 0.924174 6.231470 3.924390 3.373850 3.936410 3.893590 3.080170 5.971310 3.926650 3.184720 4.137100 3.649520 2.853400 18.766746 0.337675
TAIR:ATMG00960 PLACE:S000507 ABRERATCAL AACGCGG 301 TAIR9 244919_at lux-2_LDHH 20 0.641173 3.690700 3.998170 4.551030 4.273830 3.618310 4.575220 3.616110 4.181550 4.393680 4.182390 3.645090 4.841640 8.680048 0.049662
TAIR:ATMG00990 PLACE:S000483 | PLACE:S000483 | PLACE:S000071 | PLACE:S000483 | PLACE:S000474 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SORLIP2AT | NONAMERMOTIFTAH3H4 | SORLIP2AT | SITEIIATCYTC | SORLIP2AT | SITEIIATCYTC GGGCC | GGGCC | CATCCAACG | GGGCC | TGGGCC | GGGCC | TGGGCC 93 | 176 | 230 | 402 | 402.5 | 450 | 450.5 TAIR9 244920_s_at lux-2_LDHH 22 0.856957 58.694500 48.682400 50.213400 50.394900 49.901700 53.084400 53.143900 45.764700 46.059300 45.921200 45.738600 57.574100 15.907855 2.159059
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244921_s_at lux-2_LDHH 4 0.931996 39.465500 35.107700 37.300400 37.631300 22.657200 36.347200 37.207200 32.683800 34.483800 40.835900 22.396000 38.470900 21.798461 1.696035
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244922_s_at lux-2_LDHH 0 0.988652 18.044600 6.538990 6.929600 7.610980 7.778160 6.642450 18.157200 6.504790 7.387530 7.336350 8.524440 6.185220 17.690673 1.578534
TAIR:ATMG01020 PLACE:S000477 | PLACE:S000111 ANAERO1CONSENSUS | TATABOX4 AAACAAA | TATATAA 95 | 159 TAIR9 244923_s_at lux-2_LDHH 21 0.719236 6.269330 5.963750 4.915040 5.655750 5.696900 5.140200 5.749090 6.040380 4.455150 5.442080 6.145260 5.000490 16.612859 0.123632
TAIR:ATMG01040 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 376 TAIR9 244924_at lux-2_LDHH 1 0.893263 6.500840 5.298680 5.028410 4.287730 4.805300 4.611640 5.970570 4.818810 4.939590 4.265310 4.955400 4.319020 19.243058 0.314692
TAIR:ATMG00510 PLACE:S000477 | PLACE:S000111 | PLACE:S000081 | PLACE:S000186 ANAERO1CONSENSUS | TATABOX4 | POLASIG2 | SURE1STPAT21 AAACAAA | TATATAA | AATTAAA | AATAGAAAA 151 | 293 | 408 | 414 TAIR9 244925_at lux-2_LDHH 23 0.978845 15.610700 9.233040 8.754880 10.534400 9.138490 11.432500 16.678900 9.869350 9.519190 10.177200 9.500740 11.723800 16.997858 1.229635
TAIR:ATMG00520 PLACE:S000153 | PLACE:S000426 | PLACE:S000080 LTRECOREATCOR15 | UPRMOTIFIIAT | POLASIG1 CCGAC | CCTTTCACCTCTTCCCACG | AATAAA 179 | 357 | 516.5 TAIR9 244926_s_at lux-2_LDHH 21 0.964456 4.651910 3.446990 3.333930 3.347550 4.001840 4.599100 4.513870 3.305030 3.318480 3.184530 3.911820 4.325140 15.133415 0.363337
TAIR:ATMG00530 PLACE:S000483 | PLACE:S000474 | PLACE:S000414 SORLIP2AT | SITEIIATCYTC | ABRELATERD1 GGGCC | TGGGCC | ACGTG 172 | 172.5 | 458 TAIR9 244927_at lux-2_LDHH 0 0.915515 6.692920 4.760640 4.508140 4.915120 5.235160 4.860010 7.177390 4.994980 4.202890 5.250110 5.353210 4.469590 19.283717 0.317600
TAIR:ATMG00570 PLACE:S000111 | PLACE:S000153 TATABOX4 | LTRECOREATCOR15 TATATAA | CCGAC 184 | 549 TAIR9 244928_s_at lux-2_LDHH 1 0.908451 6.190630 5.130510 4.947060 4.585000 5.455800 4.642280 6.485790 5.530140 4.922600 4.794570 5.063810 4.584160 18.838066 0.260047
TAIR:AT2G07717 PLACE:S000167 | PLACE:S000192 | PLACE:S000080 | PLACE:S000109 MYBPLANT | ACIPVPAL2 | POLASIG1 | TATABOX2 CACCTACC | CCCACCTACC | AATAAA | TATAAAT 33.5 | 34.5 | 125.5 | 129 TAIR9 244929_at lux-2_LDHH 16 0.637482 143.921000 104.374000 103.548000 100.257000 150.146000 81.590400 144.091000 102.518000 103.376000 99.699600 147.212000 77.101900 13.805812 3.423506
TAIR:AT2G07809 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 17 | 207.5 TAIR9 244930_at lux-2_LDHH 2 0.799026 3.715540 3.746880 2.537280 3.196960 2.758340 2.930780 3.632660 3.414520 2.311930 3.282950 2.824640 3.142140 17.486073 0.190838
TAIR:ATMG00630 PLACE:S000483 | PLACE:S000483 SORLIP2AT | SORLIP2AT GGGCC | GGGCC 387 | 428 TAIR9 244931_at lux-2_LDHH 23 0.980218 8.280880 4.559430 4.990670 4.715770 5.079760 6.117270 8.951940 4.434250 5.351850 4.851850 5.181730 6.182650 16.718410 0.706918
TAIR:ATCG01060 PLACE:S000149 CCA1ATLHCB1 AAAAATCT 80.5 TAIR9 244932_at lux-2_LDHH 5 0.823886 1236.700000 1251.450000 863.003000 1324.090000 608.850000 955.919000 1291.750000 1186.890000 945.703000 1366.000000 661.927000 941.339000 13.768360 87.032235
TAIR:ATCG01070 PLACE:S000483 | PLACE:S000477 | PLACE:S000185 SORLIP2AT | ANAERO1CONSENSUS | SURE2STPAT21 GGGCC | AAACAAA | AATACTAAT 90 | 361 | 433 PPDB 244933_at lux-2_LDHH 23 0.840680 382.606000 266.243000 192.204000 274.928000 169.933000 324.982000 405.070000 274.972000 184.201000 272.659000 167.230000 295.772000 17.713430 38.799934
TAIR:ATCG01080 PLACE:S000185 | PLACE:S000111 | PLACE:S000081 | PLACE:S000111 | PLACE:S000477 SURE2STPAT21 | TATABOX4 | POLASIG2 | TATABOX4 | ANAERO1CONSENSUS AATACTAAT | TATATAA | AATTAAA | TATATAA | AAACAAA 52 | 176 | 198 | 212 | 278 TAIR9 244934_at lux-2_LDHH 23 0.877798 15.668800 13.456600 4.859380 11.209200 7.863290 19.319100 17.230800 13.398900 5.197560 11.006900 7.638260 21.050600 16.165506 2.961430
TAIR:ATCG01090 PLACE:S000153 LTRECOREATCOR15 CCGAC 288 PPDB 244935_at lux-2_LDHH 20 0.760590 6600.120000 6702.180000 5219.820000 6646.870000 6375.240000 7825.800000 7137.460000 6187.750000 5727.930000 6806.410000 5880.760000 7196.540000 14.768352 331.668811
TAIR:ATCG01100 PLACE:S000080 POLASIG1 AATAAA 452.5 TAIR9 244936_at lux-2_LDHH 4 0.696690 2538.320000 2953.210000 2140.560000 2732.920000 1857.420000 3148.620000 2384.670000 2790.770000 2125.820000 2838.510000 1828.920000 3112.860000 17.849939 114.916169
TAIR:ATCG01110 PLACE:S000081 | PLACE:S000053 | PLACE:S000081 | PLACE:S000080 | PLACE:S000081 POLASIG2 | HEXMOTIFTAH3H4 | POLASIG2 | POLASIG1 | POLASIG2 AATTAAA | ACGTCA | AATTAAA | AATAAA | AATTAAA 30 | 110.5 | 381 | 456.5 | 522 TAIR9 244937_at lux-2_LDHH 21 0.821252 68.402000 65.982600 32.097900 72.474100 32.902400 117.657000 64.386500 71.541600 32.043000 75.618300 33.672800 114.762000 15.403958 11.175748
TAIR:ATCG01120 PLACE:S000081 | PLACE:S000080 | PLACE:S000081 | PLACE:S000111 | PLACE:S000471 POLASIG2 | POLASIG1 | POLASIG2 | TATABOX4 | UP1ATMSD AATTAAA | AATAAA | AATTAAA | TATATAA | GGCCCAATT 11 | 86.5 | 152 | 212 | 349 TAIR9 244938_at lux-2_LDHH 11 0.895511 182.713000 284.141000 238.662000 277.049000 298.988000 235.939000 176.971000 303.821000 255.098000 265.390000 295.889000 230.105000 5.657000 16.739988
TAIR:ATCG00065 PLACE:S000080 | PLACE:S000080 | PLACE:S000186 | PLACE:S000111 POLASIG1 | POLASIG1 | SURE1STPAT21 | TATABOX4 AATAAA | AATAAA | AATAGAAAA | TATATAA 5.5 | 100.5 | 351 | 546 TAIR9 244939_at lux-2_LDHH 20 0.853014 92.358500 106.271000 65.443500 98.927500 87.969100 86.223800 91.821600 102.379000 59.385800 97.420800 92.128500 79.121400 16.342985 2.054094
TAIR:ATCG01230 PLACE:S000414 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 ABRELATERD1 | POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 ACGTG | AATAAA | AATAAA | AATAAA | AATAAA 90 | 331.5 | 351.5 | 373.5 | 473.5 TAIR9 244940_at lux-2_LDHH 20 0.814936 1065.050000 1055.240000 843.457000 1016.920000 974.631000 993.969000 1138.270000 1071.320000 782.922000 984.658000 912.559000 1019.000000 17.072526 44.189776
TAIR:ATMG00010 PLACE:S000080 | PLACE:S000153 POLASIG1 | LTRECOREATCOR15 AATAAA | CCGAC 53.5 | 450 TAIR9 244941_at lux-2_LDHH 1 0.894522 4.239740 3.757070 3.386600 3.517680 3.615630 3.289790 4.270600 3.967580 3.335050 3.429860 3.820850 3.501300 18.413825 0.145990
TAIR:ATMG00050 PLACE:S000483 | PLACE:S000474 | PLACE:S000081 | PLACE:S000080 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SITEIIATCYTC | POLASIG2 | POLASIG1 | SORLIP2AT | SITEIIATCYTC GGGCC | TGGGCC | AATTAAA | AATAAA | GGGCC | TGGGCT 248 | 248.5 | 287 | 411.5 | 435 | 478.5 TAIR9 244942_at lux-2_LDHH 0 0.938229 4.726420 3.427400 3.365320 3.469200 3.584340 3.166590 5.041100 3.537570 3.369750 3.130680 3.890250 3.292850 17.721565 0.231867
TAIR:ATMG00070 PLACE:S000483 SORLIP2AT GGGCC 212 PPDB 244943_at lux-2_LDHH 19 0.959494 6.879550 7.073620 6.014030 6.488970 9.170090 11.749900 6.328250 6.921920 6.563460 7.055800 9.570770 11.078600 12.702513 1.100833
TAIR:ATMG00110 PLACE:S000111 | PLACE:S000220 | PLACE:S000483 | PLACE:S000153 | PLACE:S000081 TATABOX4 | GRAZMRAB28 | SORLIP2AT | LTRECOREATCOR15 | POLASIG2 TATATAA | CATGCCGCC | GGGCC | CCGAC | AATTAAA 55 | 129 | 217 | 340 | 482 TAIR9 244945_at lux-2_LDHH 17 0.945194 4.173420 4.458930 4.230330 4.535590 6.058670 4.696940 4.504310 4.610070 4.088580 4.673760 5.732670 4.935180 10.701379 0.308923
TAIR:ATMG00130 PLACE:S000080 POLASIG1 AATAAA 133.5 TAIR9 244947_at lux-2_LDHH 0 0.986891 8.805450 4.655860 3.988140 4.268500 4.337850 4.209770 9.512190 4.253920 3.632360 4.647430 4.442670 4.238380 17.766464 0.824888
TAIR:ATMG00140 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 134 | 542.5 TAIR9 244948_at lux-2_LDHH 0 0.985089 6.981170 3.944270 4.082650 4.198530 4.233600 3.927060 6.628070 4.251280 4.298010 3.866360 4.098270 3.733370 18.376325 0.428417
TAIR:ATMG00150 - - - - TAIR9 244949_at lux-2_LDHH 6 0.649324 5.102280 3.952020 4.160520 5.082510 3.873360 3.791570 4.988190 4.005180 3.980920 4.974050 3.885800 3.468910 1.214518 0.081979
TAIR:ATMG00160 PLACE:S000111 | PLACE:S000483 | PLACE:S000414 | PLACE:S000080 | PLACE:S000167 TATABOX4 | SORLIP2AT | ABRELATERD1 | POLASIG1 | MYBPLANT TATATAA | GGGCC | ACGTG | AATAAA | CACCAACC 61 | 95 | 246 | 292.5 | 409.5 PPDB 244950_at lux-2_LDHH 3 0.935965 13.931000 17.339200 12.836900 12.583400 10.236800 12.690300 13.187000 16.897500 11.606400 11.607300 10.693900 11.900600 21.315283 1.244597
TAIR:AT2G07723 PLACE:S000414 ABRELATERD1 ACGTG 147 TAIR9 244951_s_at lux-2_LDHH 17 0.954841 13.949600 17.238000 16.520400 15.199200 26.509300 17.979200 12.578200 16.703800 15.709400 14.652500 27.044700 17.663900 10.012869 1.915078
TAIR:ATMG00260 PLACE:S000081 | PLACE:S000080 POLASIG2 | POLASIG1 AATTAAA | AATAAA 130 | 147.5 TAIR9 244952_at lux-2_LDHH 23 0.769327 5.824480 4.807420 4.666750 3.700020 5.042580 4.480010 5.602080 4.814450 4.686170 3.419860 5.273880 4.151650 18.024515 0.299902
TAIR:ATMG00270 PLACE:S000474 | PLACE:S000507 SITEIIATCYTC | ABRERATCAL TGGGCT | CACGCGG 283.5 | 332 TAIR9 244953_s_at lux-2_LDHH 23 0.857859 4.649810 4.751910 4.257620 3.723420 5.248680 5.321270 5.037980 4.484770 4.290520 3.877800 5.210200 4.815360 21.133457 0.277346
TAIR:AT2G07732 PLACE:S000440 CDA1ATCAB2 CAAAACGC 125.5 TAIR9 244954_s_at lux-2_LDHH 8 0.784198 4.419930 3.994550 6.289060 4.543420 5.765140 4.249620 4.457380 4.184110 6.197160 4.358310 5.401700 4.105740 4.970948 0.309838
TAIR:ATMG00320 PLACE:S000385 | PLACE:S000474 EVENINGAT | SITEIIATCYTC AAAATATCT | TGGGCT 334 | 453.5 TAIR9 244955_at lux-2_LDHH 23 0.931132 4.886060 3.346300 3.131020 3.852690 3.135080 3.935080 5.109790 3.284660 2.973080 3.649450 2.978380 3.820320 16.976982 0.309199
TAIR:AT2G07737 PLACE:S000472 UP2ATMSD AAACCCTA 17.5 TAIR9 244956_s_at lux-2_LDHH 1 0.962790 6.648620 4.871510 3.759250 4.233770 4.207740 4.233310 6.185480 4.845170 3.852070 4.636400 3.955180 4.276680 18.415875 0.435088
TAIR:ATMG00400 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 277 TAIR9 244957_at lux-2_LDHH 0 0.996351 21.718900 5.288100 6.666970 5.575440 5.532760 4.858330 22.628000 5.329390 6.260290 6.041320 5.293320 4.994450 18.304299 2.598960
TAIR:AT2G07703 PLACE:S000460 | PLACE:S000483 | PLACE:S000483 | PLACE:S000474 CTRMCAMV35S | SORLIP2AT | SORLIP2AT | SITEIIATCYTC TCTCTCTCT | GGGCC | GGGCC | TGGGCC 238 | 292 | 332 | 332.5 TAIR9 244958_at lux-2_LDHH 7 0.765089 4.056140 4.380570 4.800200 3.701380 4.454220 4.358310 3.821680 4.117890 5.034680 3.449380 4.026110 4.286660 12.512326 0.087973
TAIR:ATMG00500 PLACE:S000153 LTRECOREATCOR15 CCGAC 31 TAIR9 244959_s_at lux-2_LDHH 8 0.674047 14.593000 12.334900 13.222500 10.334600 15.042700 10.177800 15.029800 13.092400 13.683300 11.160000 14.911600 9.425730 14.842991 0.272290
TAIR:ATCG01020 PLACE:S000080 | PLACE:S000111 | PLACE:S000477 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 POLASIG1 | TATABOX4 | ANAERO1CONSENSUS | TATABOX4 | POLASIG1 | POLASIG1 AATAAA | TATATAA | AAACAAA | TATATAA | AATAAA | AATAAA 12.5 | 17 | 311 | 333 | 462.5 | 542.5 TAIR9 244960_at lux-2_LDHH 7 0.795100 2394.200000 2538.960000 2422.160000 2524.710000 2456.460000 2217.060000 2533.450000 2546.420000 2285.360000 2495.830000 2281.940000 2144.460000 11.416481 50.600815
TAIR:ATCG01040 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000080 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | POLASIG1 AATAAA | TATAAAT | AAAAATCT | AATAAA 177.5 | 334 | 502.5 | 540.5 TAIR9 244961_at lux-2_LDHH 20 0.840772 4490.810000 4292.990000 3868.800000 4534.960000 4413.370000 4160.250000 4795.670000 4606.790000 3622.150000 4345.050000 4665.800000 4350.440000 14.568025 110.609942
TAIR:ATCG01050 PLACE:S000080 | PLACE:S000149 POLASIG1 | CCA1ATLHCB1 AATAAA | AAAAATCT 19.5 | 458.5 TAIR9 244962_at lux-2_LDHH 6 0.675114 3076.160000 2686.250000 2347.580000 2876.550000 2250.430000 2449.340000 2981.270000 2688.720000 2357.980000 2988.460000 2206.410000 2369.040000 15.028474 82.811217
TAIR:ATCG00570 PLACE:S000080 POLASIG1 AATAAA 454.5 TAIR9 244963_at lux-2_LDHH 0 0.794458 3888.420000 4386.670000 3623.140000 3617.760000 3920.020000 5014.560000 4140.870000 4778.130000 3451.680000 3712.930000 3588.200000 5237.600000 19.527658 281.874273
TAIR:ATCG00580 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000477 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | ANAERO1CONSENSUS AATAAA | TATAAAT | AAAAATCT | AAACAAA 193.5 | 319 | 362.5 | 399 TAIR9 244964_at lux-2_LDHH 0 0.765647 1769.380000 1996.690000 1783.200000 1735.230000 1545.920000 2281.900000 1938.840000 2139.540000 1886.830000 1592.310000 1631.820000 2297.530000 18.123481 109.609352
TAIR:ATCG00590 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000063 | PLACE:S000080 | PLACE:S000149 POLASIG1 | POLASIG1 | POLASIG1 | MARABOX1 | POLASIG1 | CCA1ATLHCB1 AATAAA | AATAAA | AATAAA | AATAAATAAA | AATAAA | AAAAATCT 311.5 | 349.5 | 491.5 | 493.5 | 495.5 | 526.5 TAIR9 244965_at lux-2_LDHH 8 0.831467 626.329000 653.433000 569.544000 682.204000 662.712000 492.875000 655.785000 672.679000 619.161000 711.835000 701.716000 521.739000 4.111508 20.650225
TAIR:ATCG00600 - - - - TAIR9 244966_at lux-2_LDHH 4 0.804544 88.755600 107.722000 82.765500 121.783000 56.945000 126.068000 90.273800 107.170000 90.688600 116.792000 53.517600 119.014000 15.005111 3.352277
TAIR:ATCG00630 PLACE:S000080 | PLACE:S000111 | PLACE:S000081 | PLACE:S000507 | PLACE:S000477 | PLACE:S000081 POLASIG1 | TATABOX4 | POLASIG2 | ABRERATCAL | ANAERO1CONSENSUS | POLASIG2 AATAAA | TATATAA | AATTAAA | AACGCGC | AAACAAA | AATTAAA 14.5 | 29 | 230 | 380 | 385 | 499 PPDB 244967_at lux-2_LDHH 16 0.692580 5249.210000 5680.880000 5144.840000 6662.670000 5344.950000 6739.960000 5288.180000 5893.640000 4810.150000 6514.910000 5767.770000 6070.100000 10.310283 191.116036
TAIR:ATCG00640 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244968_at lux-2_LDHH 19 0.951651 3185.640000 2637.150000 2489.270000 3070.060000 3919.240000 3471.730000 3493.310000 2793.330000 2251.590000 2884.430000 3538.820000 3709.340000 12.901734 331.633193
TAIR:ATCG00650 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244969_at lux-2_LDHH 19 0.884057 1891.500000 1881.090000 1649.600000 1818.760000 2247.180000 2119.560000 2016.720000 1879.090000 1698.960000 1940.700000 2412.940000 2327.630000 12.543837 145.708700
TAIR:ATCG00660 PLACE:S000081 POLASIG2 AATTAAA 222 TAIR9 244970_at lux-2_LDHH 4 0.775380 50.067200 84.911100 45.846200 65.515100 62.121700 69.315100 52.382900 90.774200 41.744300 69.921700 64.056600 64.799600 17.349816 1.270774
TAIR:ATCG00670 PLACE:S000080 | PLACE:S000404 POLASIG1 | CARGATCONSENSUS AATAAA | CCTTTTTAGG 15.5 | 319.5 TAIR9 244971_at lux-2_LDHH 3 0.469984 2247.720000 2365.820000 2009.090000 2323.910000 2110.520000 2189.960000 2150.900000 2142.600000 2101.450000 2166.280000 2042.870000 1975.840000 22.424754 23.613764
TAIR:ATCG00680 PLACE:S000404 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000298 CARGATCONSENSUS | POLASIG1 | POLASIG1 | POLASIG1 | PYRIMIDINEBOXHVEPB1 CCTAAAAAGG | AATAAA | AATAAA | AATAAA | TTTTTTCC 9.5 | 222.5 | 247.5 | 259.5 | 323.5 PPDB 244972_at lux-2_LDHH 12 0.740844 290.388000 308.108000 136.582000 415.213000 118.396000 181.214000 287.251000 308.765000 150.104000 416.488000 118.825000 173.830000 11.575883 22.604908
TAIR:ATCG00690 PLACE:S000483 | PLACE:S000153 SORLIP2AT | LTRECOREATCOR15 GGGCC | CCGAC 331 | 461 PPDB 244973_at lux-2_LDHH 8 0.726347 156.266000 254.820000 139.382000 259.645000 92.467600 141.977000 150.047000 232.562000 152.203000 260.844000 91.865100 148.257000 11.099484 22.593163
TAIR:ATCG00700 PLACE:S000109 | PLACE:S000153 TATABOX2 | LTRECOREATCOR15 TATAAAT | CCGAC 198 | 459 TAIR9 244974_at lux-2_LDHH 4 0.657955 26.683700 43.836800 23.884900 35.691500 17.996300 38.052700 28.749000 46.997800 24.583300 38.372300 17.813000 41.556400 15.318091 2.668943
TAIR:ATCG00710 PLACE:S000477 | PLACE:S000477 ANAERO1CONSENSUS | ANAERO1CONSENSUS AAACAAA | AAACAAA 399 | 410 PPDB 244975_at lux-2_LDHH 4 0.758941 1898.330000 2415.640000 1904.140000 2298.430000 1425.620000 2302.140000 1725.460000 2595.100000 1834.250000 2330.690000 1285.370000 2385.390000 22.140483 110.284163
TAIR:ATCG00720 - - - - PPDB 244976_at lux-2_LDHH 20 0.556663 5503.230000 6651.110000 5889.170000 6352.630000 5684.270000 7059.410000 5845.790000 7153.050000 5302.160000 6268.330000 5761.740000 6789.350000 17.210368 105.227980
TAIR:ATCG00730 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 AATAAA | AATAAA | AATAAA | AATAAA 127.5 | 265.5 | 278.5 | 327.5 PPDB 244977_at lux-2_LDHH 20 0.979625 4.806180 4.571340 4.305660 4.554250 4.966670 7.894410 4.583980 4.211680 4.708290 4.297970 4.592920 7.344410 13.885334 0.573769
TAIR:ATCG00740 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 POLASIG1 | POLASIG1 | POLASIG2 AATAAA | AATAAA | AATTAAA 36.5 | 338.5 | 358 PPDB 244978_at lux-2_LDHH 22 0.815065 1254.550000 1614.060000 1037.370000 1137.080000 1429.310000 1511.400000 1151.600000 1663.910000 936.870000 1030.010000 1441.710000 1545.490000 15.950464 95.394225
TAIR:ATCG00750 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244979_at lux-2_LDHH 20 0.904691 715.630000 714.595000 383.455000 680.612000 746.538000 1424.490000 693.786000 716.409000 363.471000 735.840000 732.217000 1330.890000 13.910686 169.113853
TAIR:ATCG00760 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244980_at lux-2_LDHH 20 0.914633 411.812000 434.148000 236.407000 391.771000 447.264000 780.594000 410.826000 445.342000 257.851000 421.674000 422.776000 798.026000 14.056875 90.362809
TAIR:ATCG00770 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244981_at lux-2_LDHH 20 0.956343 167.422000 133.448000 81.881400 149.795000 149.479000 234.676000 180.976000 143.122000 84.339700 148.256000 163.624000 219.245000 14.137937 27.612994
TAIR:ATCG00780 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244982_at lux-2_LDHH 21 0.931089 159.097000 146.565000 95.688500 142.029000 154.255000 176.866000 171.456000 151.437000 103.029000 138.315000 148.007000 162.670000 14.888108 14.391668
TAIR:ATCG00790 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 | PLACE:S000414 POLASIG1 | POLASIG1 | POLASIG2 | ABRELATERD1 AATAAA | AATAAA | AATTAAA | ACGTG 162.5 | 326.5 | 360 | 540 PPDB 244983_at lux-2_LDHH 19 0.856757 658.714000 538.406000 396.889000 601.038000 719.222000 595.077000 668.931000 555.776000 406.056000 633.194000 769.205000 545.227000 23.609679 53.075837
TAIR:ATCG00800 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244984_at lux-2_LDHH 19 0.905185 2141.670000 1916.290000 1609.350000 2127.760000 2240.350000 1990.170000 2271.390000 1821.420000 1584.830000 2168.040000 2410.250000 2187.520000 23.646170 137.450176
TAIR:ATCG00810 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244985_at lux-2_LDHH 19 0.842500 1149.870000 1037.550000 817.973000 1300.560000 1148.090000 1414.700000 1234.800000 1067.760000 843.166000 1289.940000 1187.920000 1542.090000 12.925356 113.468296
TAIR:ATCG00820 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244986_at lux-2_LDHH 8 0.623651 2751.590000 2982.310000 2629.370000 2689.210000 2903.960000 2459.650000 2856.320000 2744.100000 2385.810000 2470.690000 2697.000000 2256.560000 14.966938 42.947062
TAIR:ATCG01310 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244987_s_at lux-2_LDHH 22 0.845491 5838.750000 6241.830000 5303.460000 5669.720000 6272.150000 6191.780000 5865.620000 5982.510000 4891.630000 5266.920000 6052.040000 6628.340000 14.713853 259.418789
TAIR:ATCG00840 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244988_s_at lux-2_LDHH 22 0.856555 4957.550000 4724.070000 3724.620000 4331.670000 3949.280000 5288.280000 5447.690000 4501.110000 4086.510000 4618.710000 3930.840000 5589.720000 16.522526 329.405103
TAIR:ATCG01280 - - - - TAIR9 244989_s_at lux-2_LDHH 20 0.958849 5.599230 5.564290 5.260050 4.710400 4.932030 8.971980 5.744710 5.761220 4.829700 4.531930 4.497300 9.255730 15.519262 0.744869
TAIR:ATCG01270 PLACE:S000111 TATABOX4 TATATAA 294 TAIR9 244990_s_at lux-2_LDHH 4 0.891690 9.157640 61.657000 5.882070 8.197530 13.637900 33.530700 9.380120 67.568400 6.460700 7.591130 14.424500 35.100100 16.299944 7.522390
* Row count is limited to 100.