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DIURNAL gene expression + PLACE promoter motif

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the various sizes of motifs predicted by PLACE (Plant Cis-acting Regulatory DNA Elements) database. Gene Loci without expression data or motif data were removed from this database.

References (for PLACE):
http://www.ncbi.nlm.nih.gov/pubmed/9847208
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_PLACE_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PLACE_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PLACE_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PLACE_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PLACE_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PLACE_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PLACE_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PLACE_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PLACE_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PLACE_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PLACE_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://www.dna.affrc.go.jp/PLACE/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PLACE_shortday
#download_from http://linkdata.org/work/rdf1s746i
#namespace ATTED http://atted.jp/data/locus/
#namespace PLACE http://www.dna.affrc.go.jp/sigscan/disp.cgi?
#namespace PPDB http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif name motif sequence motif position Origin of baseline sequence Probe Condition Phase Correlation label:shortday_0_hours label:shortday_4_hours label:shortday_8_hours label:shortday_12_hours label:shortday_16_hours label:shortday_20_hours label:shortday_24_hours label:shortday_28_hours label:shortday_32_hours label:shortday_36_hours label:shortday_40_hours label:shortday_44_hours Sine Phase Sine Amplitude
#object_type_xsd string string string string string string string string string string string string string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
TAIR:ATMG00640 PLACE:S000483 SORLIP2AT GGGCC 79 PPDB 244901_at shortday 18 0.612766 5.620910 5.554440 7.043440 5.145360 7.416270 6.278320 5.941060 4.497330 6.031550 4.522030 5.995140 7.344980 12.548013 0.284960
TAIR:ATMG00650 PLACE:S000394 | PLACE:S000414 | PLACE:S000483 | PLACE:S000153 ACGTABREMOTIFA2OSEM | ABRELATERD1 | SORLIP2AT | LTRECOREATCOR15 ACGTGTC | ACGTG | GGGCC | CCGAC 77 | 78 | 101 | 159 TAIR9 244902_at shortday 17 0.567160 6.094990 5.748570 5.247360 7.115850 10.844200 6.299870 5.464310 7.786460 5.798620 7.339280 6.297060 8.673470 10.483629 0.589538
TAIR:ATMG00660 PLACE:S000483 | PLACE:S000474 | PLACE:S000474 | PLACE:S000167 | PLACE:S000507 SORLIP2AT | SITEIIATCYTC | SITEIIATCYTC | MYBPLANT | ABRERATCAL GGGCC | TGGGCC | TGGGCT | AACCAACC | AACGCGG 212 | 212.5 | 217.5 | 303.5 | 531 TAIR9 244903_at shortday 16 0.692059 6.550380 7.496620 8.513810 8.457790 8.104030 10.468400 9.102150 5.288400 7.056810 9.006880 8.663450 9.259460 11.083423 0.604760
TAIR:ATMG00670 PLACE:S000477 | PLACE:S000111 | PLACE:S000111 | PLACE:S000477 ANAERO1CONSENSUS | TATABOX4 | TATABOX4 | ANAERO1CONSENSUS AAACAAA | TATATAA | TATATAA | AAACAAA 98 | 155 | 212 | 398 TAIR9 244904_at shortday 8 0.653021 5.379910 5.473990 7.208390 4.388650 4.409400 6.070240 5.979590 4.569030 5.861640 5.389440 4.810000 5.130680 13.627801 0.213419
TAIR:ATMG00680 PLACE:S000153 LTRECOREATCOR15 CCGAC 478 TAIR9 244905_at shortday 0 0.618938 4.288040 4.485630 4.816260 3.697050 5.130510 4.651460 5.038550 4.452870 4.288180 3.934980 4.230400 3.896650 18.366452 0.100896
TAIR:ATMG00690 PLACE:S000080 | PLACE:S000200 POLASIG1 | HBOXCONSENSUSPVCHS AATAAA | CCTACCTTAGAATCT 343.5 | 540 TAIR9 244906_at shortday 18 0.695457 4.424320 3.775080 5.229950 5.771360 5.886190 7.573330 8.011120 4.889800 5.441910 6.839260 6.426720 7.300730 12.057251 0.566605
TAIR:ATMG00710 - - - - TAIR9 244907_at shortday 8 0.786866 4.323740 4.428670 7.169050 5.133370 6.259420 4.001830 5.099160 4.739530 6.431730 3.999320 4.707560 4.085380 3.086360 0.388010
TAIR:ATMG00720 - - - - TAIR9 244908_at shortday 4 0.520210 4.896640 4.515160 5.135240 4.209260 5.067880 4.663940 5.105430 5.444370 4.505900 4.470380 4.646490 4.224250 15.401931 0.114532
TAIR:ATMG00740 PLACE:S000477 | PLACE:S000507 | PLACE:S000477 ANAERO1CONSENSUS | ABRERATCAL | ANAERO1CONSENSUS AAACAAA | AACGTGG | AAACAAA 72 | 103 | 126 TAIR9 244909_at shortday 0 0.697652 4.212930 3.892570 3.739570 3.385950 3.936780 3.775190 3.535680 4.096520 4.132420 3.762840 3.345460 3.577770 21.789161 0.105684
TAIR:ATMG00750 PLACE:S000507 | PLACE:S000474 ABRERATCAL | SITEIIATCYTC CACGCGG | TGGGCT 332 | 361.5 TAIR9 244910_s_at shortday 8 0.419375 4.487150 4.323520 4.925050 3.700680 3.967680 3.816810 3.313450 3.475590 4.276940 3.661440 4.207140 5.093920 15.676015 0.010663
TAIR:AT2G07783 PLACE:S000149 CCA1ATLHCB1 AACAATCT 317.5 TAIR9 244912_at shortday 8 0.951226 14.714000 34.835500 110.703000 21.686300 40.311600 41.228400 42.006700 12.049100 106.068000 25.776400 30.456100 35.300200 2.389833 10.359894
TAIR:ATMG00840 PLACE:S000426 UPRMOTIFIIAT CCCAGAGTAGCCAACCACG 107 TAIR9 244913_at shortday 10 0.384222 3.610310 4.342660 4.745330 3.756440 4.438520 3.467720 3.548000 3.465580 3.536380 3.594500 3.470110 4.011660 8.889907 0.073799
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244914_at shortday 8 0.649224 5.447540 5.824050 10.181100 6.046410 7.724240 5.473690 7.681820 5.137840 6.887750 5.492250 6.643870 5.093390 3.429483 0.358416
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244915_s_at shortday 10 0.352785 3.804920 4.122040 4.698400 4.125970 4.231960 4.128050 4.141400 4.316890 3.492280 4.117870 4.101390 3.620470 9.034723 0.055402
TAIR:ATMG00880 PLACE:S000474 SITEIIATCYTC TGGGCT 409.5 TAIR9 244916_at shortday 8 0.664200 2.396470 2.764150 3.350150 2.370810 2.552150 2.444250 2.586170 2.667310 2.583770 2.808860 2.557590 2.320240 1.711865 0.119407
TAIR:AT2G07682 PLACE:S000153 | PLACE:S000167 LTRECOREATCOR15 | MYBPLANT CCGAC | CACCAAAC 124 | 492.5 TAIR9 244917_at shortday 10 0.589421 3.152300 3.804400 4.608740 3.713410 3.497970 3.085830 3.079750 3.768730 2.948850 3.182940 3.898740 3.024410 9.150201 0.159575
TAIR:ATMG00960 PLACE:S000507 ABRERATCAL AACGCGG 301 TAIR9 244919_at shortday 12 0.348131 3.499590 3.487840 3.802980 3.261480 3.838700 3.651360 3.127790 3.933560 2.956430 3.758800 3.608880 3.495950 9.960297 0.034717
TAIR:ATMG00990 PLACE:S000483 | PLACE:S000483 | PLACE:S000071 | PLACE:S000483 | PLACE:S000474 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SORLIP2AT | NONAMERMOTIFTAH3H4 | SORLIP2AT | SITEIIATCYTC | SORLIP2AT | SITEIIATCYTC GGGCC | GGGCC | CATCCAACG | GGGCC | TGGGCC | GGGCC | TGGGCC 93 | 176 | 230 | 402 | 402.5 | 450 | 450.5 TAIR9 244920_s_at shortday 8 0.664366 17.399200 15.617300 47.605300 26.016800 23.204500 41.791000 29.163200 16.821500 35.004500 19.239500 27.466900 23.878500 6.262168 1.359898
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244921_s_at shortday 8 0.810945 17.108000 15.304800 49.446300 20.136100 25.552500 33.451500 24.431200 15.683800 35.605100 18.401700 25.041800 21.107400 4.456468 1.998251
TAIR:AT2G07674 PLACE:S000456 | PLACE:S000477 | PLACE:S000111 VOZATVPP | ANAERO1CONSENSUS | TATABOX4 GCGTTCCTCGGACGC | AAACAAA | TATATAA 173 | 314 | 378 TAIR9 244922_s_at shortday 7 0.780520 6.068790 5.315840 7.785240 5.125090 4.807390 4.548050 5.098670 5.969290 5.899470 4.777440 4.605360 4.573140 0.055260 0.464520
TAIR:ATMG01020 PLACE:S000477 | PLACE:S000111 ANAERO1CONSENSUS | TATABOX4 AAACAAA | TATATAA 95 | 159 TAIR9 244923_s_at shortday 8 0.633119 5.985410 6.445040 5.836070 6.296790 6.081230 5.167190 6.148740 5.626310 6.367230 5.956220 7.181980 5.568260 5.375435 0.122358
TAIR:ATMG01040 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 376 TAIR9 244924_at shortday 22 0.586406 8.051920 6.018020 5.750300 6.152440 7.439890 6.857850 6.193440 6.098170 6.078740 5.733770 5.190870 6.562580 15.854160 0.285314
TAIR:ATMG00510 PLACE:S000477 | PLACE:S000111 | PLACE:S000081 | PLACE:S000186 ANAERO1CONSENSUS | TATABOX4 | POLASIG2 | SURE1STPAT21 AAACAAA | TATATAA | AATTAAA | AATAGAAAA 151 | 293 | 408 | 414 TAIR9 244925_at shortday 5 0.678050 12.958000 14.788200 14.739100 12.227900 13.770700 14.171500 15.900100 14.750300 13.637800 13.707200 12.700000 13.991800 15.789650 0.433005
TAIR:ATMG00520 PLACE:S000153 | PLACE:S000426 | PLACE:S000080 LTRECOREATCOR15 | UPRMOTIFIIAT | POLASIG1 CCGAC | CCTTTCACCTCTTCCCACG | AATAAA 179 | 357 | 516.5 TAIR9 244926_s_at shortday 8 0.539710 3.435270 3.152400 4.439080 3.323580 4.136730 3.709690 4.408670 3.990690 4.307900 3.468370 4.049420 3.969060 11.365143 0.001842
TAIR:ATMG00530 PLACE:S000483 | PLACE:S000474 | PLACE:S000414 SORLIP2AT | SITEIIATCYTC | ABRELATERD1 GGGCC | TGGGCC | ACGTG 172 | 172.5 | 458 TAIR9 244927_at shortday 17 0.746179 5.457240 5.511960 5.471470 5.281600 7.516280 5.228300 5.006510 5.243020 5.626340 5.579490 5.853790 6.020640 2.281375 0.241432
TAIR:ATMG00570 PLACE:S000111 | PLACE:S000153 TATABOX4 | LTRECOREATCOR15 TATATAA | CCGAC 184 | 549 TAIR9 244928_s_at shortday 8 0.906224 4.561680 4.527350 8.348170 4.676620 5.252130 5.028330 4.474010 5.094670 6.624670 4.238370 4.161130 5.076210 1.778390 0.410051
TAIR:AT2G07717 PLACE:S000167 | PLACE:S000192 | PLACE:S000080 | PLACE:S000109 MYBPLANT | ACIPVPAL2 | POLASIG1 | TATABOX2 CACCTACC | CCCACCTACC | AATAAA | TATAAAT 33.5 | 34.5 | 125.5 | 129 TAIR9 244929_at shortday 12 0.658122 46.346200 44.829500 96.315400 87.100400 94.734000 62.938500 79.642800 42.377300 79.195300 44.543600 87.877100 51.842900 7.315464 7.412033
TAIR:AT2G07809 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 17 | 207.5 TAIR9 244930_at shortday 2 0.382732 3.993400 3.896870 3.403970 3.547740 3.902410 3.310200 3.303230 3.283220 3.010360 3.530190 2.925840 3.149680 20.162400 0.041212
TAIR:ATMG00630 PLACE:S000483 | PLACE:S000483 SORLIP2AT | SORLIP2AT GGGCC | GGGCC 387 | 428 TAIR9 244931_at shortday 8 0.664138 5.981580 5.346930 6.408530 4.400220 6.103170 5.250160 4.948530 5.329110 6.676350 5.839970 5.514150 5.859200 2.708611 0.098347
TAIR:ATCG01060 PLACE:S000149 CCA1ATLHCB1 AAAAATCT 80.5 TAIR9 244932_at shortday 12 0.774502 231.345000 206.612000 688.992000 443.170000 646.337000 247.420000 241.976000 294.035000 545.407000 252.506000 454.145000 276.578000 5.584822 73.556832
TAIR:ATCG01070 PLACE:S000483 | PLACE:S000477 | PLACE:S000185 SORLIP2AT | ANAERO1CONSENSUS | SURE2STPAT21 GGGCC | AAACAAA | AATACTAAT 90 | 361 | 433 PPDB 244933_at shortday 13 0.683556 437.803000 378.648000 521.639000 494.993000 490.560000 459.130000 272.236000 420.492000 454.725000 499.417000 327.562000 414.657000 6.789738 29.388438
TAIR:ATCG01080 PLACE:S000185 | PLACE:S000111 | PLACE:S000081 | PLACE:S000111 | PLACE:S000477 SURE2STPAT21 | TATABOX4 | POLASIG2 | TATABOX4 | ANAERO1CONSENSUS AATACTAAT | TATATAA | AATTAAA | TATATAA | AAACAAA 52 | 176 | 198 | 212 | 278 TAIR9 244934_at shortday 12 0.546427 206.003000 123.218000 130.021000 253.628000 137.843000 168.530000 117.911000 212.723000 114.238000 166.689000 107.241000 130.801000 9.526635 3.237999
TAIR:ATCG01090 PLACE:S000153 LTRECOREATCOR15 CCGAC 288 PPDB 244935_at shortday 16 0.638007 4536.820000 3258.160000 6411.390000 4369.500000 7060.290000 4332.150000 6592.500000 4397.960000 6413.240000 5859.780000 7925.980000 5982.690000 2.927933 482.950566
TAIR:ATCG01100 PLACE:S000080 POLASIG1 AATAAA 452.5 TAIR9 244936_at shortday 12 0.543429 1267.490000 770.090000 2445.910000 1078.140000 2336.470000 878.217000 2109.000000 1393.060000 2150.640000 1761.680000 2595.710000 1993.030000 7.856916 161.219804
TAIR:ATCG01110 PLACE:S000081 | PLACE:S000053 | PLACE:S000081 | PLACE:S000080 | PLACE:S000081 POLASIG2 | HEXMOTIFTAH3H4 | POLASIG2 | POLASIG1 | POLASIG2 AATTAAA | ACGTCA | AATTAAA | AATAAA | AATTAAA 30 | 110.5 | 381 | 456.5 | 522 TAIR9 244937_at shortday 16 0.700797 43.188600 29.363600 143.982000 35.093900 147.329000 24.211300 115.855000 33.967200 133.930000 66.081000 221.582000 92.732500 3.631571 17.960520
TAIR:ATCG01120 PLACE:S000081 | PLACE:S000080 | PLACE:S000081 | PLACE:S000111 | PLACE:S000471 POLASIG2 | POLASIG1 | POLASIG2 | TATABOX4 | UP1ATMSD AATTAAA | AATAAA | AATTAAA | TATATAA | GGCCCAATT 11 | 86.5 | 152 | 212 | 349 TAIR9 244938_at shortday 9 0.797427 68.441800 63.986300 100.011000 96.653700 57.975700 64.181800 83.136300 76.717800 88.791200 79.083800 61.408100 51.722400 2.098179 7.972454
TAIR:ATCG00065 PLACE:S000080 | PLACE:S000080 | PLACE:S000186 | PLACE:S000111 POLASIG1 | POLASIG1 | SURE1STPAT21 | TATABOX4 AATAAA | AATAAA | AATAGAAAA | TATATAA 5.5 | 100.5 | 351 | 546 TAIR9 244939_at shortday 16 0.551810 66.439500 77.578600 199.083000 112.123000 145.277000 231.790000 280.595000 28.754900 202.987000 115.203000 97.574100 132.776000 13.391530 7.647580
TAIR:ATCG01230 PLACE:S000414 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 ABRELATERD1 | POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 ACGTG | AATAAA | AATAAA | AATAAA | AATAAA 90 | 331.5 | 351.5 | 373.5 | 473.5 TAIR9 244940_at shortday 16 0.582829 534.068000 751.183000 2116.420000 1139.250000 1237.580000 1939.100000 2041.850000 288.430000 1544.320000 1056.340000 945.524000 1455.560000 10.458513 68.852712
TAIR:ATMG00010 PLACE:S000080 | PLACE:S000153 POLASIG1 | LTRECOREATCOR15 AATAAA | CCGAC 53.5 | 450 TAIR9 244941_at shortday 16 0.361759 7.103650 6.427290 6.740050 6.792530 6.658980 5.703200 6.169020 5.637580 6.403190 6.003510 6.417150 6.393990 6.208270 0.046071
TAIR:ATMG00050 PLACE:S000483 | PLACE:S000474 | PLACE:S000081 | PLACE:S000080 | PLACE:S000483 | PLACE:S000474 SORLIP2AT | SITEIIATCYTC | POLASIG2 | POLASIG1 | SORLIP2AT | SITEIIATCYTC GGGCC | TGGGCC | AATTAAA | AATAAA | GGGCC | TGGGCT 248 | 248.5 | 287 | 411.5 | 435 | 478.5 TAIR9 244942_at shortday 8 0.642343 3.839430 2.990530 3.867130 3.176110 3.106480 3.417970 3.198150 3.263860 3.673120 3.406150 3.118280 2.881550 11.481615 0.092531
TAIR:ATMG00070 PLACE:S000483 SORLIP2AT GGGCC 212 PPDB 244943_at shortday 18 0.840673 8.067850 7.127550 9.635240 7.880580 13.408200 12.673600 9.499160 5.548000 9.643960 9.230700 10.723300 13.842300 11.611104 1.356048
TAIR:ATMG00110 PLACE:S000111 | PLACE:S000220 | PLACE:S000483 | PLACE:S000153 | PLACE:S000081 TATABOX4 | GRAZMRAB28 | SORLIP2AT | LTRECOREATCOR15 | POLASIG2 TATATAA | CATGCCGCC | GGGCC | CCGAC | AATTAAA 55 | 129 | 217 | 340 | 482 TAIR9 244945_at shortday 20 0.303213 8.184120 6.604960 7.407210 6.541610 7.462860 5.991910 5.806680 5.888920 5.878610 6.092260 6.745640 6.852780 23.053383 0.094803
TAIR:ATMG00130 PLACE:S000080 POLASIG1 AATAAA 133.5 TAIR9 244947_at shortday 12 0.585207 4.174580 3.855080 4.657060 4.226880 4.731980 4.389190 3.849830 3.414120 4.871390 3.531780 4.617340 3.443260 6.772532 0.138005
TAIR:ATMG00140 PLACE:S000153 | PLACE:S000080 LTRECOREATCOR15 | POLASIG1 CCGAC | AATAAA 134 | 542.5 TAIR9 244948_at shortday 7 0.938962 4.684250 5.858510 6.466920 5.289170 4.763370 4.330730 5.405260 5.649220 5.743110 4.923370 4.522910 4.341740 0.593387 0.420687
TAIR:ATMG00150 - - - - TAIR9 244949_at shortday 2 0.325998 3.876270 4.166640 4.225090 3.587230 4.293480 3.394490 4.295640 3.351740 3.276020 4.065710 3.857110 3.937140 22.905070 0.034815
TAIR:ATMG00160 PLACE:S000111 | PLACE:S000483 | PLACE:S000414 | PLACE:S000080 | PLACE:S000167 TATABOX4 | SORLIP2AT | ABRELATERD1 | POLASIG1 | MYBPLANT TATATAA | GGGCC | ACGTG | AATAAA | CACCAACC 61 | 95 | 246 | 292.5 | 409.5 PPDB 244950_at shortday 17 0.730850 7.449070 6.875390 7.900880 6.313820 12.728400 7.903360 8.089780 8.032430 8.440730 9.862520 9.475600 9.130330 1.977317 0.663425
TAIR:AT2G07723 PLACE:S000414 ABRELATERD1 ACGTG 147 TAIR9 244951_s_at shortday 15 0.865876 16.413000 9.905650 20.515700 21.370300 27.091400 18.117700 17.250500 11.311500 19.735300 30.459100 34.034600 31.138200 9.437602 4.506614
TAIR:ATMG00260 PLACE:S000081 | PLACE:S000080 POLASIG2 | POLASIG1 AATTAAA | AATAAA 130 | 147.5 TAIR9 244952_at shortday 18 0.581497 3.501390 4.329380 4.343660 3.609790 4.369490 4.690830 3.850510 4.665510 3.631200 4.049590 4.426970 4.491680 13.623372 0.079946
TAIR:ATMG00270 PLACE:S000474 | PLACE:S000507 SITEIIATCYTC | ABRERATCAL TGGGCT | CACGCGG 283.5 | 332 TAIR9 244953_s_at shortday 19 0.650365 6.973890 6.586200 5.799680 5.563810 6.201370 7.938670 7.069280 4.871290 4.960910 7.623330 5.529700 5.398470 14.608152 0.265133
TAIR:AT2G07732 PLACE:S000440 CDA1ATCAB2 CAAAACGC 125.5 TAIR9 244954_s_at shortday 14 0.742602 5.053410 5.310750 7.033910 6.052120 6.147880 7.176030 6.328710 5.843160 7.638420 7.729040 7.990580 6.851510 7.712133 0.389633
TAIR:ATMG00320 PLACE:S000385 | PLACE:S000474 EVENINGAT | SITEIIATCYTC AAAATATCT | TGGGCT 334 | 453.5 TAIR9 244955_at shortday 14 0.843033 3.244620 3.309090 3.481800 3.597280 3.787320 3.616950 3.454640 3.349830 3.247760 3.819510 3.792510 3.359000 8.918876 0.121750
TAIR:AT2G07737 PLACE:S000472 UP2ATMSD AAACCCTA 17.5 TAIR9 244956_s_at shortday 12 0.662887 4.168150 4.716740 5.043680 5.389190 5.833490 5.232750 5.090120 4.920930 6.646190 5.244200 4.545360 5.284600 5.393285 0.196808
TAIR:ATMG00400 PLACE:S000477 ANAERO1CONSENSUS AAACAAA 277 TAIR9 244957_at shortday 8 0.783489 4.832220 4.687910 9.159450 6.172920 4.813580 4.922870 5.666150 4.814760 6.156210 4.779820 5.126450 5.515290 2.598775 0.412222
TAIR:AT2G07703 PLACE:S000460 | PLACE:S000483 | PLACE:S000483 | PLACE:S000474 CTRMCAMV35S | SORLIP2AT | SORLIP2AT | SITEIIATCYTC TCTCTCTCT | GGGCC | GGGCC | TGGGCC 238 | 292 | 332 | 332.5 TAIR9 244958_at shortday 16 0.624691 4.511930 3.746430 4.482210 4.257580 3.877200 4.384510 4.560780 3.648900 4.700280 4.380990 5.048560 3.755660 4.241214 0.079276
TAIR:ATMG00500 PLACE:S000153 LTRECOREATCOR15 CCGAC 31 TAIR9 244959_s_at shortday 14 0.608808 6.742760 8.032630 11.283400 8.695440 12.959900 10.758300 12.136200 7.693080 17.509100 12.127200 14.402900 11.896800 7.582491 0.985992
TAIR:ATCG01020 PLACE:S000080 | PLACE:S000111 | PLACE:S000477 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 POLASIG1 | TATABOX4 | ANAERO1CONSENSUS | TATABOX4 | POLASIG1 | POLASIG1 AATAAA | TATATAA | AAACAAA | TATATAA | AATAAA | AATAAA 12.5 | 17 | 311 | 333 | 462.5 | 542.5 TAIR9 244960_at shortday 8 0.695813 2252.350000 1943.610000 3163.890000 2273.710000 2654.950000 1894.370000 2581.290000 1690.050000 2751.570000 2365.560000 2317.200000 2381.740000 5.241346 110.042519
TAIR:ATCG01040 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000080 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | POLASIG1 AATAAA | TATAAAT | AAAAATCT | AATAAA 177.5 | 334 | 502.5 | 540.5 TAIR9 244961_at shortday 10 0.688719 1017.470000 682.108000 1140.660000 1370.410000 721.461000 1165.970000 876.285000 784.292000 1216.630000 987.741000 501.618000 850.709000 8.972476 60.031444
TAIR:ATCG01050 PLACE:S000080 | PLACE:S000149 POLASIG1 | CCA1ATLHCB1 AATAAA | AAAAATCT 19.5 | 458.5 TAIR9 244962_at shortday 8 0.696159 519.026000 425.982000 1987.800000 700.918000 1672.110000 789.233000 758.447000 590.802000 1778.780000 436.875000 1684.330000 552.395000 5.874230 186.986686
TAIR:ATCG00570 PLACE:S000080 POLASIG1 AATAAA 454.5 TAIR9 244963_at shortday 22 0.286953 6653.170000 5977.180000 6166.010000 5033.150000 6211.210000 4476.910000 6540.660000 5857.160000 5797.790000 6992.450000 6661.130000 7314.250000 21.539261 78.107103
TAIR:ATCG00580 PLACE:S000080 | PLACE:S000109 | PLACE:S000149 | PLACE:S000477 POLASIG1 | TATABOX2 | CCA1ATLHCB1 | ANAERO1CONSENSUS AATAAA | TATAAAT | AAAAATCT | AAACAAA 193.5 | 319 | 362.5 | 399 TAIR9 244964_at shortday 5 0.317386 1561.730000 1511.680000 1478.600000 1090.760000 1390.930000 877.333000 1567.670000 1426.260000 1458.730000 1755.180000 1395.220000 1815.790000 14.311723 34.750940
TAIR:ATCG00590 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000063 | PLACE:S000080 | PLACE:S000149 POLASIG1 | POLASIG1 | POLASIG1 | MARABOX1 | POLASIG1 | CCA1ATLHCB1 AATAAA | AATAAA | AATAAA | AATAAATAAA | AATAAA | AAAAATCT 311.5 | 349.5 | 491.5 | 493.5 | 495.5 | 526.5 TAIR9 244965_at shortday 8 0.953238 465.067000 250.706000 1086.150000 712.990000 445.599000 417.475000 507.911000 475.650000 992.263000 643.700000 346.385000 491.175000 3.088176 115.384398
TAIR:ATCG00600 - - - - TAIR9 244966_at shortday 15 0.363478 193.948000 78.112900 153.818000 146.931000 176.726000 68.665200 124.788000 166.721000 145.025000 196.440000 186.257000 213.903000 8.923197 10.613030
TAIR:ATCG00630 PLACE:S000080 | PLACE:S000111 | PLACE:S000081 | PLACE:S000507 | PLACE:S000477 | PLACE:S000081 POLASIG1 | TATABOX4 | POLASIG2 | ABRERATCAL | ANAERO1CONSENSUS | POLASIG2 AATAAA | TATATAA | AATTAAA | AACGCGC | AAACAAA | AATTAAA 14.5 | 29 | 230 | 380 | 385 | 499 PPDB 244967_at shortday 8 0.757998 4088.780000 1614.330000 5615.310000 2886.180000 4631.740000 2507.060000 3756.020000 3590.240000 5746.880000 3514.700000 3838.030000 3143.600000 3.677768 309.087402
TAIR:ATCG00640 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244968_at shortday 16 0.778254 3013.300000 2078.480000 3252.900000 3031.140000 3455.680000 2713.530000 3195.730000 2643.210000 2586.170000 3355.730000 3867.780000 3250.050000 9.935924 229.444366
TAIR:ATCG00650 PLACE:S000080 | PLACE:S000080 | PLACE:S000111 | PLACE:S000081 POLASIG1 | POLASIG1 | TATABOX4 | POLASIG2 AATAAA | AATAAA | TATATAA | AATTAAA 26.5 | 272.5 | 287 | 488 PPDB 244969_at shortday 16 0.713877 1900.660000 988.781000 2161.140000 1937.170000 2119.100000 1441.910000 1701.850000 1501.040000 1591.950000 1813.630000 2076.430000 1933.150000 3.065870 137.904161
TAIR:ATCG00660 PLACE:S000081 POLASIG2 AATTAAA 222 TAIR9 244970_at shortday 4 0.579582 94.225400 69.119400 66.570000 116.617000 77.263100 121.472000 88.999800 136.248000 94.829300 105.824000 33.058700 76.499800 22.152915 4.766440
TAIR:ATCG00670 PLACE:S000080 | PLACE:S000404 POLASIG1 | CARGATCONSENSUS AATAAA | CCTTTTTAGG 15.5 | 319.5 TAIR9 244971_at shortday 8 0.749900 1064.540000 1248.360000 2529.320000 1519.800000 2039.210000 1658.380000 1979.520000 996.899000 2618.370000 1550.650000 2007.680000 1684.220000 5.993747 152.479413
TAIR:ATCG00680 PLACE:S000404 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000298 CARGATCONSENSUS | POLASIG1 | POLASIG1 | POLASIG1 | PYRIMIDINEBOXHVEPB1 CCTAAAAAGG | AATAAA | AATAAA | AATAAA | TTTTTTCC 9.5 | 222.5 | 247.5 | 259.5 | 323.5 PPDB 244972_at shortday 19 0.727811 623.761000 500.978000 338.666000 883.297000 1004.690000 464.363000 1043.890000 928.711000 287.862000 1006.160000 1034.820000 793.770000 0.739954 91.299971
TAIR:ATCG00690 PLACE:S000483 | PLACE:S000153 SORLIP2AT | LTRECOREATCOR15 GGGCC | CCGAC 331 | 461 PPDB 244973_at shortday 14 0.737454 348.560000 355.613000 278.681000 437.908000 555.092000 285.368000 455.365000 440.297000 285.777000 538.159000 546.132000 466.696000 10.105406 40.447733
TAIR:ATCG00700 PLACE:S000109 | PLACE:S000153 TATABOX2 | LTRECOREATCOR15 TATAAAT | CCGAC 198 | 459 TAIR9 244974_at shortday 8 0.947189 29.554200 28.309400 63.433700 35.781500 22.065600 31.023000 33.054900 31.503300 54.699900 29.142500 32.300600 31.509000 1.825964 4.962008
TAIR:ATCG00710 PLACE:S000477 | PLACE:S000477 ANAERO1CONSENSUS | ANAERO1CONSENSUS AAACAAA | AAACAAA 399 | 410 PPDB 244975_at shortday 8 0.765172 1560.080000 1597.850000 3935.630000 1644.020000 2528.900000 655.001000 2158.800000 2182.150000 3624.430000 2378.850000 3000.380000 2088.610000 3.565213 371.942811
TAIR:ATCG00720 - - - - PPDB 244976_at shortday 7 0.629649 4775.000000 5511.000000 7510.110000 4668.140000 6038.600000 3432.980000 5816.440000 5766.080000 6589.590000 5540.260000 6633.290000 5437.070000 2.760824 369.023226
TAIR:ATCG00730 PLACE:S000080 | PLACE:S000080 | PLACE:S000080 | PLACE:S000080 POLASIG1 | POLASIG1 | POLASIG1 | POLASIG1 AATAAA | AATAAA | AATAAA | AATAAA 127.5 | 265.5 | 278.5 | 327.5 PPDB 244977_at shortday 12 0.595228 18.612200 13.887700 14.512000 34.302700 17.270800 21.900400 10.003600 19.273800 12.500200 16.028800 11.455300 11.732100 6.444466 1.358171
TAIR:ATCG00740 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 POLASIG1 | POLASIG1 | POLASIG2 AATAAA | AATAAA | AATTAAA 36.5 | 338.5 | 358 PPDB 244978_at shortday 22 0.666716 2908.440000 2282.920000 1599.070000 1873.370000 1187.250000 2263.270000 2139.150000 1839.560000 1141.810000 2545.970000 1395.190000 2958.410000 16.856085 230.132078
TAIR:ATCG00750 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244979_at shortday 23 0.598035 2532.230000 1627.680000 1213.590000 939.116000 708.107000 998.969000 2047.040000 1545.210000 952.610000 2149.100000 985.992000 2715.720000 17.923277 250.441685
TAIR:ATCG00760 PLACE:S000186 | PLACE:S000080 | PLACE:S000109 | PLACE:S000111 | PLACE:S000111 | PLACE:S000080 | PLACE:S000080 SURE1STPAT21 | POLASIG1 | TATABOX2 | TATABOX4 | TATABOX4 | POLASIG1 | POLASIG1 AATAGAAAA | AATAAA | TATAAAT | TATATAA | TATATAA | AATAAA | AATAAA 246 | 366.5 | 370 | 372 | 393 | 426.5 | 471.5 PPDB 244980_at shortday 23 0.636373 1257.170000 733.675000 493.165000 414.732000 362.211000 315.581000 970.620000 764.150000 386.285000 845.828000 429.766000 1275.310000 17.988960 139.656792
TAIR:ATCG00770 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244981_at shortday 23 0.481487 648.938000 226.168000 344.453000 304.601000 262.947000 164.561000 433.390000 337.009000 235.428000 537.220000 368.973000 743.265000 20.857874 42.081350
TAIR:ATCG00780 PLACE:S000111 | PLACE:S000507 | PLACE:S000414 TATABOX4 | ABRERATCAL | ABRELATERD1 TATATAA | AACGCGT | ACGTG 29 | 201 | 265 PPDB 244982_at shortday 16 0.541139 201.224000 87.061500 295.872000 157.532000 113.204000 159.668000 210.818000 138.970000 195.911000 268.799000 171.096000 292.273000 5.057344 5.443616
TAIR:ATCG00790 PLACE:S000080 | PLACE:S000080 | PLACE:S000081 | PLACE:S000414 POLASIG1 | POLASIG1 | POLASIG2 | ABRELATERD1 AATAAA | AATAAA | AATTAAA | ACGTG 162.5 | 326.5 | 360 | 540 PPDB 244983_at shortday 8 0.592597 454.845000 401.863000 1251.130000 622.008000 403.711000 1175.820000 968.677000 269.189000 1037.950000 646.781000 301.933000 885.596000 12.535705 14.071925
TAIR:ATCG00800 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244984_at shortday 17 0.518851 2617.570000 2336.090000 2936.160000 1537.760000 2642.600000 2001.970000 2267.450000 2183.710000 2286.290000 2497.050000 3443.800000 3295.990000 12.280619 118.829614
TAIR:ATCG00810 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244985_at shortday 16 0.519319 1881.540000 1316.770000 2133.340000 1170.860000 1884.650000 912.096000 1761.670000 1581.460000 1758.060000 2034.710000 3068.480000 2475.420000 9.861731 132.098038
TAIR:ATCG00820 PLACE:S000111 TATABOX4 TATATAA 448 PPDB 244986_at shortday 19 0.715659 2030.810000 1784.540000 2102.910000 2136.110000 2130.660000 2355.900000 2873.740000 1784.200000 1947.470000 2198.880000 2715.440000 2875.760000 12.917508 182.681913
TAIR:ATCG01310 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244987_s_at shortday 19 0.803178 5898.040000 5128.320000 5213.350000 5352.410000 5540.510000 5473.220000 5847.590000 4821.580000 4500.710000 5690.960000 6491.680000 6531.080000 12.801295 322.633250
TAIR:ATCG00840 PLACE:S000483 SORLIP2AT GGGCC 524 PPDB 244988_s_at shortday 0 0.590438 4695.370000 3149.110000 3762.360000 3038.510000 3677.440000 2001.920000 4356.520000 2807.620000 3248.730000 3645.090000 4004.590000 4374.290000 20.565080 126.479606
TAIR:ATCG01280 - - - - TAIR9 244989_s_at shortday 8 0.495146 16.005000 16.558000 10.137100 17.961300 15.277100 11.827200 11.304200 12.200800 15.050200 12.480400 13.550300 9.455110 3.801101 0.508576
TAIR:ATCG01270 PLACE:S000111 TATABOX4 TATATAA 294 TAIR9 244990_s_at shortday 12 0.609437 30.500900 27.921000 25.600400 63.349400 28.375900 32.511200 21.106200 24.938400 27.902100 24.617300 20.705800 19.271200 6.511669 2.970848
* Row count is limited to 100.