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PromoterCAD template files for adding regulatory motif data

These template files are useful if you would like to add new data to PromoterCAD, such as for a new organisms, experimental measurements, or motif identification methods.

Tutorial Page:
Advanced Tutorial 2B: add a new motif database to PromoterCAD
PromoterCAD Web Server:
http://promotercad.org
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://atted.jp/download.shtml
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name PromoterCAD_AtGenExpress_mean_Leaf_Template
#download_from http://linkdata.org/work/rdf1s921i
#namespace TAIR http://www.arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif name motif sequence motif position label:Col-0_roset4_1l label:gl1T_roset4_1l label:Col-0_roset2 label:Col-0_roset4 label:Col-0_roset6 label:Col-0_roset8 label:Col-0_roset10 label:Col-0_roset12 label:gl1T_rosett12 label:Col-0_lf7_prox label:Col-0_lf7_distal label:Col-0_senescent label:Col-0_cauline label:Col-0_roset14 label:Col-0_roset21 label:Col-0_leaf
#object_type_xsd string string string float string string string string string string string string string string string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
TAIR:At1g67790 0.1253 0.0532 -0.0001 0.0497 0.0597 0.0605 0.0542 0.0622 0.0786 0.2580 0.0370 -0.1281 -0.0816 0.0469 -0.0544 -0.0599
TAIR:At1g67760 0.1353 0.0951 -0.2253 -0.4072 0.0389 -0.0604 0.0851 0.1038 0.0113 -0.3508 -0.2671 -0.1358 -0.1995 -0.0945 0.1910 0.0990
TAIR:At1g67710 -0.1970 -0.3491 0.1118 0.4004 0.5057 0.3002 0.3183 -0.0179 -0.2377 0.4225 0.1245 -0.1934 0.0403 -0.3688 -0.3810 -0.4688
TAIR:At1g67680 -0.0670 -0.1463 -0.4375 -0.6843 -0.5207 -0.2451 -0.2366 -0.3024 -0.2685 -0.3860 -0.5145 0.1002 -0.7642 0.0836 0.0159 -0.5947
TAIR:At1g67660 1.2268 1.3226 0.0611 0.1195 0.3489 0.7052 0.9367 1.2091 0.9980 0.8877 0.5380 -0.1907 0.0831 1.0769 0.8910 1.1466
TAIR:At1g67670 -0.0036 -0.0614 -0.0134 -0.0578 0.1185 -0.0032 0.0376 -0.0275 -0.1225 0.0089 -0.0415 0.0387 -0.1067 0.0157 0.0563 0.0125
TAIR:At1g67690 0.3846 0.0677 -0.7891 -0.6481 -0.4663 -0.0808 -0.0018 0.1942 0.3424 -0.2464 -0.2960 -0.8687 -0.8430 0.6090 0.5558 0.0874
TAIR:At1g67770 0.0026 -0.1302 -0.1123 -0.0835 0.1210 -0.1800 0.0418 0.0189 -0.0961 0.0085 -0.1994 -0.1890 -0.3815 -0.0275 -0.0355 0.0366
TAIR:At1g67780 0.0255 -0.1022 -0.1593 -0.1288 -0.1359 -0.1305 -0.0963 -0.0314 -0.1168 -0.1828 -0.1093 -0.1457 -0.1758 -0.0719 0.0368 -0.0902
TAIR:At1g67810 -1.8667 -1.2361 0.5343 0.8159 0.6262 0.2409 -0.4630 -1.5816 -1.6733 0.4264 0.5207 3.4606 2.1297 -1.6328 -1.5712 -0.6451
TAIR:At1g67820 -0.7244 -0.7715 -0.8303 -0.8244 -0.6608 -0.9534 -1.0388 -0.5764 -0.4074 -0.8830 -1.0363 0.3855 -0.1043 -0.2896 -0.0034 -0.6406
TAIR:At1g67740 1.8012 1.8124 1.2360 1.3444 1.5200 1.5970 1.6365 1.5099 1.5333 1.6412 1.5617 -0.4022 1.3234 1.5465 1.3404 1.9604
TAIR:At1g67750 -0.7024 -1.0321 -2.7275 -1.1010 -0.7909 -0.6157 -0.3515 -0.1194 0.8202 -1.1022 -2.0171 -3.0567 -2.3402 0.3854 0.5926 -0.5937
TAIR:At1g67800 -0.2097 0.4073 1.1135 1.1161 1.0143 0.7615 0.4985 0.0380 0.3591 0.7250 0.9171 2.2006 1.5238 -0.6468 -0.5472 -0.3256
TAIR:At1g67700 1.7113 1.7086 0.9469 1.1044 1.3728 1.5016 1.5318 1.4987 1.4045 1.3540 1.3067 -0.6021 1.0663 1.3379 1.1680 1.7638
TAIR:At1g67730 -0.4727 -0.5673 -1.3067 -1.1941 -1.1344 -0.9135 -0.8058 -0.6004 -0.4668 -1.1073 -1.2127 -0.7973 -0.6926 -0.4367 -0.3984 -0.3623
TAIR:At1g67850 -0.5572 -0.2776 0.1148 0.2175 0.1634 -0.0580 -0.0987 -0.1796 0.0792 -0.1058 0.2931 1.1455 0.6878 -0.2621 -0.3427 -0.7488
TAIR:At1g67840 0.6906 0.6890 0.6331 1.0352 0.9607 0.8071 0.6016 0.5277 1.0239 1.0278 1.1716 0.3760 1.3443 0.5839 0.3142 0.8604
TAIR:At1g67720 -0.1407 -0.2125 0.4748 0.1408 0.1971 0.0099 -0.2043 -0.2422 -0.1411 0.1079 0.4299 -0.1541 0.3196 -0.2712 -0.3537 -0.5004
TAIR:At1g44254 0.1113 0.1149 0.0656 0.1486 0.3176 0.1759 0.1487 -0.0175 0.1225 0.4470 0.2366 -0.2338 0.0731 0.2734 -0.0003 0.0765
TAIR:At1g44575 1.1446 1.0539 0.8900 0.9762 1.0589 1.1127 1.0706 1.0389 1.1665 1.2466 1.0807 -1.3850 0.5966 1.0457 0.9890 1.0855
TAIR:At1g67855 -0.0061 -0.1143 -0.0012 -0.1039 0.0308 -0.0436 -0.0223 -0.0871 -0.1151 -0.1062 0.0364 -0.0054 0.0821 -0.0698 0.0176 0.0344
TAIR:At1g67830 0.0079 -0.2120 -1.9212 -1.2625 -1.1327 -0.6333 -0.3280 0.2677 0.3923 -0.9983 -1.2396 -2.9715 -1.3899 0.8444 1.0788 -0.1570
TAIR:At1g38340 0.2120 0.1520 0.0562 0.0321 0.1395 -0.0066 0.1765 0.1414 0.0841 -0.1440 -0.0955 -0.1524 -0.1386 0.1045 0.1128 0.0866
TAIR:At1g58842 0.0045 0.2761 0.7074 0.8284 0.8303 0.7356 0.6381 0.3885 0.8478 0.8955 0.8964 1.1911 1.4984 0.0340 -0.2689 0.3805
TAIR:At1g59124 0.3322 0.5138 0.8332 0.9153 0.9181 0.8436 0.7403 0.7483 0.8960 0.8041 0.8341 1.2651 1.4859 0.5243 0.2473 0.2810
TAIR:At1g59171 0.0430 -0.0168 -0.0493 0.0523 0.0213 0.0198 -0.0998 -0.0055 0.0894 0.2286 0.0571 -0.0202 0.0098 0.0471 -0.0175 -0.1255
TAIR:At1g59265 -0.0397 -0.0071 0.0366 0.1260 0.1428 0.0928 -0.1008 -0.0885 0.0028 0.1728 -0.0004 -0.0198 -0.0329 -0.0170 -0.0340 0.0521
TAIR:At1g44510 0.0747 0.1388 0.1247 0.0769 0.3641 0.1330 0.2033 0.0181 0.0368 -0.1115 -0.1083 -0.1449 -0.0806 0.1332 0.2697 0.2979
TAIR:At1g44478 0.1679 0.2580 -0.0494 0.0585 0.1410 0.2588 0.0531 0.0429 0.0673 0.2396 0.1089 0.0835 0.0988 0.1081 -0.0333 0.1171
TAIR:At1g44446 2.0364 1.7167 0.9237 0.5658 0.6127 0.2125 0.5538 0.5256 1.5564 0.7295 0.7717 -0.2258 1.4357 1.9933 1.7480 2.1307
TAIR:At1g44414 -0.0017 -0.0127 0.1079 0.1212 0.0195 -0.1968 -0.0511 -0.1081 -0.1215 0.1388 -0.1121 0.1688 0.1355 -0.1781 -0.1324 0.1180
TAIR:At1g44350 -0.9775 -0.4294 1.3369 1.0047 0.7208 0.3508 -0.1247 -1.0068 -1.0419 0.4433 1.0073 -0.4450 -0.6149 0.7909 0.9350 -0.0672
TAIR:At1g44318 0.3994 0.2308 -0.0725 -0.0218 -0.0403 0.1471 0.1442 0.1073 -0.0680 0.1109 0.0353 -0.0282 -0.0448 -0.0026 0.0812 0.1699
TAIR:At1g44222 -0.0796 -0.2829 -0.4234 -0.2494 -0.1250 -0.2169 -0.1196 -0.2896 -0.3487 -0.3090 -0.5758 -0.5135 -0.3474 -0.1959 -0.1202 -0.1163
TAIR:At1g56700 -0.6745 -0.6368 0.3061 0.0262 -0.2905 -0.4981 -0.6195 -0.7317 -0.6703 -0.4848 -0.4647 1.0120 0.4061 -0.6388 -0.6466 -0.0718
TAIR:At1g56600 -0.7692 -0.6939 3.4431 1.4929 -0.0480 -0.5924 -0.6890 -0.7053 -0.0289 -0.4417 0.0171 5.3618 4.2604 -0.7372 -0.4856 0.6801
TAIR:At1g56650 -0.4029 -0.7177 2.1494 -0.1640 -0.4920 -0.6135 -0.5250 -0.5452 0.7773 -0.5321 -0.7380 5.0068 1.3504 1.7890 1.4061 -0.0823
TAIR:At1g56580 -0.0830 -0.5595 -1.9883 -1.6288 -1.4172 -0.9616 -0.5259 0.1048 0.2003 -0.9465 -1.3041 -2.7889 -1.0893 0.6078 0.8726 -0.1586
TAIR:At1g25360 0.1507 0.1231 0.0233 -0.0806 0.0662 -0.0649 -0.0330 0.0634 -0.0112 -0.1619 -0.0278 0.0104 -0.0382 0.1208 0.1591 0.1328
TAIR:At1g25350 0.2013 -0.0475 -0.4667 -0.4871 -0.5257 -0.3696 -0.2772 -0.0168 -0.0750 -0.3627 -0.4847 -0.0676 -0.5103 0.2504 0.3105 -0.3406
TAIR:At1g25290 0.4853 0.4309 -0.0885 -0.0152 0.0936 0.3007 0.3571 0.4368 0.3536 0.2614 0.2919 -0.4340 0.0638 0.6064 0.3568 0.4971
TAIR:At1g25280 -0.4883 -0.2150 -0.1791 -0.1287 -0.1381 -0.2084 -0.1303 -0.0968 -0.1441 -0.0111 0.1179 0.4325 0.4423 -0.4824 -0.6527 -0.7116
TAIR:At1g25270 -0.0819 -0.1241 -0.2682 -0.3072 -0.1512 -0.3079 -0.1173 -0.1161 -0.3093 -0.2733 -0.1384 -0.1325 -0.2315 -0.3416 -0.1778 -0.1342
TAIR:At1g25250 -0.0256 -0.1141 -0.0192 0.0528 0.4359 0.2358 0.1777 0.1628 -0.0953 0.0666 -0.0454 -0.1481 -0.0686 -0.3560 -0.3290 -0.2186
TAIR:At1g25240 -0.4731 -0.3267 -0.4995 -0.5264 -0.3995 -0.6423 -0.4607 -0.4368 -0.5247 -0.4596 -0.4667 -0.2345 -0.5608 -0.5388 -0.4830 -0.5107
TAIR:At1g25230 0.7017 0.8313 0.9956 1.0092 0.6675 0.9702 0.7741 0.3327 -0.2342 1.0943 0.8672 -1.7546 -0.3295 0.0796 -0.3655 1.0591
TAIR:At1g24996 -0.1313 0.0621 0.3104 0.2183 0.0376 0.0242 0.2474 -0.0825 0.2596 0.4559 0.4414 0.5889 0.2935 -0.4064 -0.3248 -0.1415
TAIR:At1g25260 0.3356 -0.2515 -0.8498 -0.8944 -0.8937 -0.5781 -0.2978 0.1292 0.0143 -0.9234 -1.0345 -0.5946 -1.2249 0.6055 0.8943 -0.2882
TAIR:At1g25330 -0.5967 -0.6614 -0.7303 -0.6122 -0.7367 -0.6609 -0.4583 -0.5089 -0.7231 -0.7809 -0.7960 -0.9145 -0.8489 -0.6937 -0.6654 -0.7776
TAIR:At1g25370 -0.5389 -0.6179 0.6682 0.4912 0.5161 0.2447 -0.3331 -0.2207 -0.6629 0.2294 0.3798 0.9589 0.1793 -0.7230 -0.5980 -0.6832
TAIR:At1g25275 -0.0600 0.4035 1.1555 1.1101 0.9668 0.8635 0.8736 0.9168 0.4033 0.8615 0.8872 1.1325 1.1118 0.5169 0.5506 1.0104
TAIR:At1g25340 0.0784 -0.1265 -0.2064 -0.0639 0.0308 -0.2404 -0.2339 -0.2402 -0.1298 -0.2528 -0.3063 -0.1519 -0.1041 -0.0941 -0.0572 -0.1062
TAIR:At1g25320 -0.3894 -0.2802 -1.1904 -0.8071 -0.6905 -0.3818 -0.2244 -0.0461 -0.2533 -0.4251 -0.6080 -0.9203 -0.7600 0.3889 0.3543 -0.1969
TAIR:At1g24764 -0.0190 -0.1645 -0.9450 -0.6368 -0.8010 -0.2421 -0.2835 -0.1973 0.2967 -0.4364 -0.4437 -1.1526 -0.6053 0.2801 -0.0397 -0.1141
TAIR:At1g25025 0.1221 0.0769 -0.1871 -0.1068 -0.2256 -0.1857 -0.1532 0.0339 0.1798 -0.1430 -0.2249 0.2231 -0.0879 0.0708 0.0564 -0.0370
TAIR:At1g24678 0.1947 0.2511 0.2513 0.1335 0.1948 0.2031 0.2212 0.2234 0.2148 0.3557 0.2797 0.1126 0.2442 0.0933 0.0207 0.0409
TAIR:At1g24938 0.2030 0.0141 0.0317 0.0370 0.1566 -0.0204 0.0040 0.0343 -0.0267 0.1086 -0.0694 0.0683 0.0324 0.0569 0.1053 -0.0245
TAIR:At1g24706 0.1094 -0.1163 -0.1588 -0.2069 -0.3068 -0.3646 -0.2388 -0.2078 0.0388 -0.2839 -0.1129 0.3244 0.2052 0.2491 0.2211 -0.1633
TAIR:At1g24735 -0.1758 -0.2828 -0.3551 -0.0144 0.0720 0.0571 -0.1251 -0.1922 -0.1875 0.2747 -0.0701 -0.2141 0.2773 -0.5265 -0.4031 -0.2500
TAIR:At1g24793 -0.5502 -0.4920 -0.3784 -0.4838 -0.5575 -0.5694 -0.5630 -0.5395 -0.4725 -0.4530 -0.4050 0.6241 0.0761 -0.4020 -0.3118 -0.5996
TAIR:At1g56540 -0.0862 0.1861 0.3226 0.6775 0.4964 0.7064 0.5231 0.2781 -0.0827 0.3413 0.2347 0.4926 0.3108 0.0812 -0.0454 -0.0633
TAIR:At1g56530 0.0146 0.1041 0.0813 -0.0312 -0.0635 0.0358 0.0098 0.0088 -0.0606 -0.0173 0.0104 -0.1089 0.0967 0.0372 -0.0230 -0.0554
TAIR:At1g56620 0.1649 0.0549 -0.1614 0.0683 0.1371 0.0665 0.1772 0.0988 0.0119 0.0869 -0.0245 -0.1596 -0.1074 0.0365 0.1508 0.0871
TAIR:At1g56720 -0.1549 -0.5581 -0.3303 -0.2629 -0.0730 -0.0614 -0.3006 -0.3944 -0.4912 -0.2534 -0.0498 -2.7566 -1.5096 0.1615 0.0136 0.5629
TAIR:At1g28270 -0.8520 -0.8093 -1.1350 -1.0752 -1.0184 -1.0909 -0.9454 -0.9654 -1.0975 -1.1061 -0.9222 -0.3885 -0.9119 -1.0064 -0.8901 -0.9856
TAIR:At1g28260 -0.6031 -0.2020 0.1723 -0.1129 -0.1545 -0.2516 -0.3055 -0.2754 -0.1165 -0.0290 -0.0519 1.0050 0.3991 -0.4555 -0.4275 0.0467
TAIR:At1g28240 -0.2016 0.0159 0.6067 0.6500 0.6293 0.5900 0.4238 -0.1095 -0.0246 0.6130 0.7959 0.5529 0.5627 -0.3668 -0.6529 -0.0233
TAIR:At1g28220 0.3883 0.2549 0.1655 0.0829 0.1895 0.0130 0.1878 0.1808 0.1927 0.0752 0.0631 0.0614 -0.0263 0.0413 0.0645 0.5855
TAIR:At1g28190 -0.5052 -0.2633 0.6730 0.3200 0.0958 -0.2275 -0.3434 -0.5100 -0.7130 -0.1639 0.2488 3.1545 0.6471 -0.4062 -0.2674 -0.2432
TAIR:At1g28170 0.0280 -0.1100 -0.0267 -0.1516 -0.0292 -0.1569 -0.1064 0.0083 -0.0881 0.0375 -0.1646 -0.1459 -0.0533 -0.2122 -0.0783 -0.0500
TAIR:At1g28327 0.0381 -0.0567 0.0223 0.0515 -0.0008 0.0431 0.0630 -0.0460 0.0485 0.0127 0.0497 0.1352 -0.0246 -0.0374 -0.0778 0.0029
TAIR:At1g28250 -0.1412 0.0223 -0.2247 -0.1458 -0.2111 -0.1393 -0.0563 0.1111 -0.0319 -0.0420 0.0679 -0.5822 -0.2359 -0.1952 -0.2247 0.1807
TAIR:At1g28280 -0.3206 0.0004 0.2832 0.1537 0.0842 0.1287 0.2367 0.0275 -0.2608 0.1074 0.1816 0.3897 0.3142 -0.3373 -0.4354 -0.0031
TAIR:At1g28200 -0.3828 -0.3323 -0.0190 -0.0218 -0.1257 -0.1855 -0.3471 -0.3989 -0.5407 -0.3111 -0.2078 0.7054 0.0363 -0.3715 -0.4257 -0.0119
TAIR:At1g28330 -1.7863 -0.7259 0.1507 0.4076 -0.2553 -0.0815 0.2111 0.6560 -1.0999 -0.3543 0.3150 1.4841 0.7473 0.7999 0.9222 0.0986
TAIR:At1g28300 0.2024 0.0044 -0.0662 -0.1049 -0.0689 -0.0884 -0.0733 0.0478 -0.0107 0.0946 -0.0771 0.0143 -0.1877 0.0976 -0.0132 -0.0958
TAIR:At1g28210 -0.0841 -0.2241 -0.4524 -0.4872 -0.3709 -0.4343 -0.3615 -0.2979 -0.1714 -0.3900 -0.3209 0.0752 -0.3583 0.1123 0.1406 -0.5541
TAIR:At1g28230 -0.3461 -0.2357 1.1211 0.6331 0.6067 0.1086 0.0123 -0.0716 0.2363 0.3524 0.4831 2.8491 1.7283 0.3877 0.1295 0.8031
TAIR:At1g56710 0.1104 0.1837 -0.0589 -0.1538 0.0492 -0.0978 -0.0771 0.1953 0.5386 0.0472 0.0007 -0.1494 0.5477 0.1001 0.1170 0.2491
TAIR:At1g56690 0.0070 0.0228 -0.2597 -0.1671 -0.1559 -0.2525 -0.1507 -0.0244 0.0384 -0.1933 -0.3019 0.0555 -0.2845 0.1191 -0.0022 -0.2100
TAIR:At1g56680 -0.3453 -0.4776 -0.5462 -0.5136 -0.3625 -0.4921 -0.4545 -0.4862 -0.4976 -0.5128 -0.4240 -0.5211 -0.4927 -0.4631 -0.4064 -0.3325
TAIR:At1g56675 0.1958 0.2488 0.0027 0.1027 0.2980 -0.0399 0.2205 0.1885 0.0578 0.0410 0.0135 0.0595 0.0014 -0.0412 0.0902 0.4086
TAIR:At1g56670 0.8576 0.5713 -0.3839 -0.0149 0.0743 0.1292 0.2727 0.3960 0.9530 0.1570 0.1980 -1.0689 -0.4106 0.2821 0.0161 0.3068
TAIR:At1g56660 -0.4214 0.3428 -0.2159 0.2187 0.5066 0.7433 0.8817 0.4162 -0.1495 0.6411 0.4910 -0.3261 0.3775 -0.3049 -0.2483 -0.4157
TAIR:At1g56610 -0.3999 -0.3308 0.4465 0.1137 -0.0393 -0.2555 -0.3752 -0.5433 -0.0665 -0.1170 0.0964 1.3220 1.3681 -0.1755 -0.1885 0.0652
TAIR:At1g56590 -0.0857 -0.2178 -0.5163 -0.2816 -0.3243 -0.2017 -0.1731 -0.2072 -0.0746 -0.1790 -0.2690 -0.1136 0.0242 0.0779 0.1834 -0.0213
TAIR:At1g56570 0.6293 0.2943 -0.0511 -0.0675 0.1757 -0.1001 0.1469 0.2159 0.3471 0.1851 -0.0638 -0.0877 -0.2906 0.3322 0.2737 0.2871
TAIR:At1g56560 -0.1546 -0.0993 0.2421 0.0058 0.0033 -0.1797 -0.2347 -0.2968 -0.2284 -0.1582 -0.0612 0.5018 0.3797 -0.1814 -0.2794 -0.1368
* Row count is limited to 100.