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PromoterCAD template files for adding regulatory motif data

These template files are useful if you would like to add new data to PromoterCAD, such as for a new organisms, experimental measurements, or motif identification methods.

Tutorial Page:
Advanced Tutorial 2B: add a new motif database to PromoterCAD
PromoterCAD Web Server:
http://promotercad.org
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://atted.jp/download.shtml
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name PromoterCAD_AtGenExpress_mean_Root_Template
#download_from http://linkdata.org/work/rdf1s921i
#namespace TAIR http://www.arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif name motif sequence motif position label:Col-0_root17 label:Col-0_root_MS1 label:Col-0_root_GM-8 label:Col-0_root_GM5-8 label:Col-0_root_GM-21 label:Col-0_root_GM5-21
#object_type_xsd string string string float string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
TAIR:At1g67790 0.1143 -0.1361 -0.2124 -0.1188 -0.2456 -0.2943
TAIR:At1g67760 0.8327 0.7625 0.0055 0.1214 -0.1798 -0.1274
TAIR:At1g67710 2.4072 1.2459 2.1675 1.4542 2.5726 2.1582
TAIR:At1g67680 0.7417 0.2252 0.2827 0.1041 -0.1316 0.0427
TAIR:At1g67660 -1.5920 -1.3415 -1.6845 -1.5773 -1.6306 -1.5223
TAIR:At1g67670 -0.1180 -0.0658 -0.0697 0.1170 -0.0526 -0.0279
TAIR:At1g67690 -0.1245 -0.5498 -0.3833 -0.5395 -0.8047 -0.7445
TAIR:At1g67770 -0.3191 -0.1484 -0.3826 -0.1683 -0.2766 -0.1369
TAIR:At1g67780 0.1469 0.0599 -0.0354 0.0469 -0.1274 -0.0741
TAIR:At1g67810 1.0579 2.2453 2.0591 1.7574 2.3065 1.9365
TAIR:At1g67820 -0.4806 -0.0458 0.0013 -0.1352 0.0406 0.2487
TAIR:At1g67740 -6.3597 -3.8933 -3.8261 -4.1155 -4.1271 -4.0740
TAIR:At1g67750 1.0515 0.0212 -1.0806 -0.4717 -1.0808 -0.6950
TAIR:At1g67800 0.3011 1.5121 1.2683 1.0060 1.6335 1.5513
TAIR:At1g67700 -2.6505 -2.6159 -2.1943 -2.8806 -2.1846 -2.7443
TAIR:At1g67730 0.2522 0.8318 0.5368 0.8293 0.1391 0.3527
TAIR:At1g67850 -1.1035 -0.7463 -0.6793 -0.8301 -0.3401 -0.5405
TAIR:At1g67840 -1.5975 -1.6428 -1.1274 -1.3111 -1.2790 -1.3803
TAIR:At1g67720 0.1205 -0.7982 -0.4791 -0.4762 -0.1491 -0.0884
TAIR:At1g44254 -0.2935 -0.1578 0.0029 -0.1622 -0.1238 -0.1744
TAIR:At1g44575 -5.4085 -3.4244 -3.8355 -3.7656 -3.6353 -3.4318
TAIR:At1g67855 -0.1275 -0.0493 -0.0237 -0.0546 -0.0533 -0.0830
TAIR:At1g67830 -1.8766 -1.9738 -2.3081 -2.5544 -2.1098 -2.1988
TAIR:At1g38340 -0.1049 -0.1070 -0.0391 0.0295 -0.0380 -0.0043
TAIR:At1g58842 -3.4101 -2.7985 -2.3523 -2.8392 -1.7217 -1.9033
TAIR:At1g59124 -4.6462 -3.9297 -3.2425 -3.5046 -2.0920 -2.2865
TAIR:At1g59171 0.6254 0.1103 0.0096 -0.1079 -0.0080 0.0488
TAIR:At1g59265 -0.0310 -0.0081 0.1469 0.1553 0.0881 -0.0099
TAIR:At1g44510 -0.1832 0.0484 -0.0510 0.0576 0.0104 -0.0019
TAIR:At1g44478 -0.2080 -0.1765 -0.0931 0.0271 -0.2305 -0.2508
TAIR:At1g44446 -3.6037 -2.6697 -2.4612 -2.8158 -2.5355 -2.3588
TAIR:At1g44414 -0.3838 -0.1554 -0.2548 -0.3609 -0.0240 -0.1520
TAIR:At1g44350 -1.5443 -0.8479 -1.2680 -1.0704 -1.3829 -1.0448
TAIR:At1g44318 0.2372 0.3155 0.2329 0.4811 0.0461 0.2032
TAIR:At1g44222 -0.7933 -0.5446 -0.4718 -0.5597 -0.5081 -0.4030
TAIR:At1g56700 0.8448 0.9820 1.6239 1.2664 1.5177 1.2743
TAIR:At1g56600 -0.1764 -0.8642 -0.8891 -0.6639 -0.7279 -0.0387
TAIR:At1g56650 -0.9531 -0.8308 -0.5637 -0.1070 -0.6498 -0.5316
TAIR:At1g56580 -1.2146 -0.6184 -1.2885 -0.5913 -1.5329 -1.1883
TAIR:At1g25360 -0.1798 -0.1949 -0.1134 -0.2198 -0.2340 -0.1928
TAIR:At1g25350 0.3226 0.2143 -0.0291 -0.0048 -0.0159 0.0314
TAIR:At1g25290 -0.4579 -0.7231 -0.7261 -0.8363 -0.7319 -1.0173
TAIR:At1g25280 0.4641 0.4726 0.7403 0.5155 0.7136 0.6220
TAIR:At1g25270 -0.3884 -0.3394 -0.2779 -0.3339 -0.3677 -0.3953
TAIR:At1g25250 -0.7509 -0.6382 -0.7819 -0.6307 -0.8375 -0.8568
TAIR:At1g25240 -0.8381 -0.1340 -0.5931 0.5679 -0.4076 -0.0847
TAIR:At1g25230 1.7411 0.7232 1.6958 1.3093 1.2180 0.6685
TAIR:At1g24996 0.4301 -0.9333 -0.8788 -0.4300 0.0964 0.0186
TAIR:At1g25260 1.0946 0.4022 0.3706 0.1310 0.3715 0.0928
TAIR:At1g25330 -1.0084 -0.9624 -0.9493 -0.6261 -0.8226 -0.6656
TAIR:At1g25370 -0.2178 0.4952 0.2008 0.3341 -0.1242 0.0252
TAIR:At1g25275 -0.2406 0.1478 0.2137 -0.2457 0.8007 0.3230
TAIR:At1g25340 -0.3085 -0.2792 -0.1704 -0.2995 -0.3087 -0.3401
TAIR:At1g25320 0.6052 0.0917 0.3244 0.1066 0.0669 -0.0709
TAIR:At1g24764 0.3179 -0.2578 -0.4522 -0.5108 -0.7097 -0.6271
TAIR:At1g25025 0.7855 0.0432 0.2131 0.1285 0.1819 0.2251
TAIR:At1g24678 -0.1018 -0.0810 -0.1696 -0.2205 -0.2175 -0.2258
TAIR:At1g24938 -0.1701 -0.2888 -0.1661 -0.0130 -0.2678 -0.1462
TAIR:At1g24706 -0.1010 -0.8047 -0.1511 -0.3006 -0.1808 -0.5387
TAIR:At1g24735 0.2266 1.2901 0.0148 0.4477 -0.0678 0.5819
TAIR:At1g24793 -0.1278 -0.0138 -0.1655 -0.1709 -0.0453 0.0036
TAIR:At1g56540 -0.0735 -0.1156 -0.0624 0.0528 -0.0857 -0.0454
TAIR:At1g56530 -0.0389 -0.0323 -0.0074 0.1032 0.1156 0.0066
TAIR:At1g56620 -0.4629 -0.2394 -0.1469 -0.0510 -0.2509 -0.2278
TAIR:At1g56720 0.0680 -0.6323 0.0068 -0.1475 -0.5260 -0.6268
TAIR:At1g28270 -1.3070 -1.5167 -1.2727 -1.3102 -1.2987 -1.3715
TAIR:At1g28260 -0.2775 -0.5279 -0.1996 -0.6032 0.7641 0.8094
TAIR:At1g28240 0.3440 0.0026 0.0219 0.3116 0.0630 0.1187
TAIR:At1g28220 -0.2315 0.0330 -0.0555 -0.1682 -0.0602 0.0680
TAIR:At1g28190 -0.0437 0.0791 -0.2862 -0.2327 0.4174 0.9103
TAIR:At1g28170 -0.2438 -0.0415 0.0188 -0.1810 -0.1527 -0.1779
TAIR:At1g28327 -0.0513 -0.0862 -0.0581 0.0474 -0.0895 -0.1036
TAIR:At1g28250 0.1873 0.5814 0.5122 0.2863 0.2865 0.3486
TAIR:At1g28280 -0.1378 0.1123 0.2471 0.3683 0.6093 0.5086
TAIR:At1g28200 0.2421 0.3587 0.5156 0.4670 0.6194 0.5596
TAIR:At1g28330 2.0948 -0.4435 2.0363 0.3304 2.4053 1.4654
TAIR:At1g28300 -0.1836 -0.2170 -0.1808 -0.1358 -0.1638 -0.0364
TAIR:At1g28210 -0.3460 -0.2289 -0.2636 -0.2287 -0.1816 -0.2677
TAIR:At1g28230 -1.6307 -1.1248 -1.3704 -1.1332 -1.2173 -0.9126
TAIR:At1g56710 -0.3014 -0.4686 -0.3668 -0.3785 -0.2679 -0.2677
TAIR:At1g56690 -0.0279 -0.4309 -0.0780 -0.0959 -0.2328 -0.2723
TAIR:At1g56680 3.2020 1.6093 1.8402 1.4073 0.7182 0.7078
TAIR:At1g56675 -0.1930 0.0650 -0.0411 0.1203 0.0890 0.0052
TAIR:At1g56670 1.2009 0.2544 0.2739 0.3526 -0.0547 0.1272
TAIR:At1g56660 1.8767 -0.5644 0.0383 0.2069 -0.0665 -0.0259
TAIR:At1g56610 -0.2511 -0.2164 -0.1878 0.0551 0.0314 0.1263
TAIR:At1g56590 0.1967 0.3548 0.2749 0.2423 0.0791 0.1424
TAIR:At1g56570 -0.1406 -0.3391 -0.3061 -0.5769 -0.3655 -0.3819
TAIR:At1g56560 -0.5712 -0.0805 0.0563 0.1027 0.0114 0.0733
* Row count is limited to 100.