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PromoterCAD template files for adding regulatory motif data

These template files are useful if you would like to add new data to PromoterCAD, such as for a new organisms, experimental measurements, or motif identification methods.

Tutorial Page:
Advanced Tutorial 2B: add a new motif database to PromoterCAD
PromoterCAD Web Server:
http://promotercad.org
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://atted.jp/download.shtml
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name PromoterCAD_AtGenExpress_median_Root_Template
#download_from http://linkdata.org/work/rdf1s921i
#namespace TAIR http://www.arabidopsis.org/servlets/TairObject?type=locus&name=
#property motif motif name motif sequence motif position label:Col-0_root17 label:Col-0_root_MS1 label:Col-0_root_GM-8 label:Col-0_root_GM5-8 label:Col-0_root_GM-21 label:Col-0_root_GM5-21
#object_type_xsd string string string float string string string string string string
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
TAIR:At1g67790 0.1371 -0.0718 -0.2370 -0.1000 -0.2505 -0.2995
TAIR:At1g67760 0.8453 0.7680 0.0899 0.1467 -0.1464 -0.0873
TAIR:At1g67710 2.4797 1.2317 2.2138 1.3974 2.6531 2.1880
TAIR:At1g67680 0.7035 0.2376 0.3093 0.1147 -0.1977 -0.0024
TAIR:At1g67660 -1.6897 -1.4199 -1.6667 -1.6079 -1.6130 -1.4968
TAIR:At1g67670 -0.1226 -0.0914 -0.0599 0.1144 -0.0776 -0.0169
TAIR:At1g67690 -0.0687 -0.5050 -0.3629 -0.5455 -0.7965 -0.7402
TAIR:At1g67770 -0.2814 -0.1465 -0.4362 -0.1983 -0.2994 -0.2055
TAIR:At1g67780 0.1535 0.0527 -0.0397 0.0390 -0.1142 -0.1028
TAIR:At1g67810 1.0186 2.2402 2.0911 1.7120 2.3384 1.9622
TAIR:At1g67820 -0.5516 -0.0470 0.0160 -0.2315 0.0015 0.2468
TAIR:At1g67740 -6.4920 -3.9299 -3.8223 -4.1044 -4.0963 -4.1568
TAIR:At1g67750 1.0158 -0.0022 -1.0930 -0.4710 -1.1570 -0.6838
TAIR:At1g67800 0.3162 1.5067 1.2754 0.9137 1.6746 1.5449
TAIR:At1g67700 -2.6387 -2.6190 -2.2706 -2.9405 -2.2320 -2.7282
TAIR:At1g67730 0.2541 0.8006 0.5041 0.8203 0.1052 0.3716
TAIR:At1g67850 -1.1352 -0.7568 -0.7513 -0.8772 -0.3195 -0.4299
TAIR:At1g67840 -1.6212 -1.6579 -1.1035 -1.4043 -1.2581 -1.3679
TAIR:At1g67720 0.1042 -0.8224 -0.5676 -0.4737 -0.1346 -0.0034
TAIR:At1g44254 -0.2929 -0.1515 -0.1267 -0.0243 -0.2171 -0.2198
TAIR:At1g44575 -5.4101 -3.3799 -3.7897 -3.7326 -3.6413 -3.3705
TAIR:At1g67855 -0.1618 -0.0018 0.0334 -0.0648 -0.0178 -0.0738
TAIR:At1g67830 -1.7812 -2.0845 -2.4163 -2.5832 -2.0741 -2.2796
TAIR:At1g38340 -0.1436 -0.0691 -0.0803 0.0708 -0.0160 -0.0694
TAIR:At1g58842 -3.4887 -2.7449 -2.1957 -2.8762 -1.7150 -1.8964
TAIR:At1g59124 -4.6161 -3.8863 -3.2503 -3.3873 -2.0956 -2.2531
TAIR:At1g59171 0.5389 0.1024 -0.0077 -0.1062 0.0021 0.0630
TAIR:At1g59265 -0.0405 -0.0802 -0.0373 0.1675 0.0418 -0.1050
TAIR:At1g44510 -0.1021 -0.0626 -0.1864 0.0657 0.0081 0.0043
TAIR:At1g44478 -0.1479 -0.1624 -0.0922 -0.0214 -0.2254 -0.2372
TAIR:At1g44446 -3.6072 -2.6238 -2.5865 -2.8213 -2.5185 -2.3507
TAIR:At1g44414 -0.3388 -0.1818 -0.2384 -0.4652 -0.0529 -0.1479
TAIR:At1g44350 -1.5117 -0.8263 -1.2028 -1.0601 -1.4194 -1.0661
TAIR:At1g44318 0.1895 0.2415 0.2251 0.4795 0.0376 0.1229
TAIR:At1g44222 -0.8172 -0.4903 -0.5176 -0.5738 -0.4612 -0.4119
TAIR:At1g56700 0.8763 0.9474 1.5903 1.2971 1.5227 1.2590
TAIR:At1g56600 -0.1523 -0.8145 -0.9379 -0.6350 -0.6467 -0.0463
TAIR:At1g56650 -0.9750 -0.8613 -0.6662 -0.1305 -0.6539 -0.5012
TAIR:At1g56580 -1.2393 -0.6731 -1.2384 -0.5825 -1.5247 -1.1941
TAIR:At1g25360 -0.2422 -0.1614 -0.1232 -0.1704 -0.2574 -0.2278
TAIR:At1g25350 0.3240 0.2338 -0.0397 -0.0026 -0.0849 0.0220
TAIR:At1g25290 -0.5014 -0.7527 -0.7452 -0.8323 -0.7282 -1.0010
TAIR:At1g25280 0.4674 0.5226 0.7743 0.4933 0.7369 0.6109
TAIR:At1g25270 -0.3838 -0.3264 -0.2390 -0.3229 -0.3457 -0.3579
TAIR:At1g25250 -0.7749 -0.6310 -0.6984 -0.6011 -0.8581 -0.8954
TAIR:At1g25240 -0.8051 -0.1453 -0.5807 0.6118 -0.3967 -0.1206
TAIR:At1g25230 1.7604 0.6995 1.6852 1.3143 1.1974 0.6754
TAIR:At1g24996 0.4716 -0.8828 -1.1227 -0.5177 0.1159 0.0330
TAIR:At1g25260 1.0643 0.3687 0.4222 0.1100 0.3760 0.0918
TAIR:At1g25330 -0.9980 -0.9580 -0.9235 -0.6294 -0.7987 -0.7025
TAIR:At1g25370 -0.2421 0.5194 0.2450 0.3051 -0.0697 0.0527
TAIR:At1g25275 -0.2434 0.1424 0.2579 -0.2386 0.7992 0.3365
TAIR:At1g25340 -0.3800 -0.2672 -0.1190 -0.2825 -0.3150 -0.3147
TAIR:At1g25320 0.5776 0.0900 0.2897 0.1265 0.0183 -0.0304
TAIR:At1g24764 0.3165 -0.2593 -0.3915 -0.5178 -0.7294 -0.7396
TAIR:At1g25025 0.7826 0.0580 0.1711 0.0327 0.1792 0.1990
TAIR:At1g24678 -0.1113 -0.0417 -0.1550 -0.1808 -0.2537 -0.1927
TAIR:At1g24938 -0.1911 -0.2800 -0.2483 -0.1157 -0.2474 -0.1419
TAIR:At1g24706 -0.0955 -0.7484 -0.1716 -0.3030 -0.1999 -0.5313
TAIR:At1g24735 0.2671 1.3049 0.0228 0.3973 -0.0922 0.6471
TAIR:At1g24793 -0.1108 -0.0010 -0.1434 -0.1327 -0.0092 0.0414
TAIR:At1g56540 -0.0958 -0.1505 -0.0481 0.0467 -0.0854 -0.0474
TAIR:At1g56530 -0.0657 -0.0232 -0.0406 0.1083 0.0926 -0.0178
TAIR:At1g56620 -0.4791 -0.2766 -0.2627 -0.0657 -0.2601 -0.2523
TAIR:At1g56720 0.0863 -0.6270 -0.0193 -0.1456 -0.5405 -0.5448
TAIR:At1g28270 -1.1810 -1.4802 -1.3363 -1.2788 -1.2537 -1.3153
TAIR:At1g28260 -0.2927 -0.5930 -0.2205 -0.5905 0.7582 0.8281
TAIR:At1g28240 0.3597 0.0424 0.0069 0.3732 0.0217 0.1121
TAIR:At1g28220 -0.2671 0.0730 0.0167 -0.1948 -0.0635 0.0314
TAIR:At1g28190 -0.0386 0.0804 -0.2621 -0.2361 0.3968 0.7862
TAIR:At1g28170 -0.2442 -0.0029 0.0776 -0.2383 -0.1616 -0.1816
TAIR:At1g28327 -0.0328 -0.0940 -0.0558 0.0526 -0.0982 -0.1105
TAIR:At1g28250 0.1681 0.5198 0.4895 0.3022 0.2987 0.3334
TAIR:At1g28280 -0.1228 0.1272 0.2944 0.2994 0.5514 0.5145
TAIR:At1g28200 0.2543 0.3625 0.5190 0.4761 0.6272 0.5383
TAIR:At1g28330 2.1234 -0.4754 2.0379 0.3031 2.3707 1.4382
TAIR:At1g28300 -0.1418 -0.2412 -0.1814 -0.0489 -0.1809 -0.0957
TAIR:At1g28210 -0.3264 -0.2097 -0.2265 -0.2319 -0.2516 -0.2349
TAIR:At1g28230 -1.6288 -1.1201 -1.3930 -1.1614 -1.1931 -1.1370
TAIR:At1g56710 -0.3092 -0.4397 -0.3890 -0.4182 -0.2754 -0.2559
TAIR:At1g56690 -0.0554 -0.4648 -0.0784 -0.0810 -0.2779 -0.2436
TAIR:At1g56680 3.1961 1.6536 1.7070 1.4602 0.7024 0.6613
TAIR:At1g56675 -0.2267 0.0934 -0.0289 0.1247 0.0627 0.0101
TAIR:At1g56670 1.1955 0.2567 0.2982 0.3353 0.0108 0.1346
TAIR:At1g56660 1.8497 -0.5492 -0.0330 0.0553 -0.0657 -0.0553
TAIR:At1g56610 -0.2275 -0.2656 -0.2313 0.0520 0.0307 0.1288
TAIR:At1g56590 0.2327 0.3473 0.3430 0.2550 0.1189 0.1490
TAIR:At1g56570 -0.1329 -0.3576 -0.3937 -0.5873 -0.3550 -0.3701
TAIR:At1g56560 -0.5810 -0.0814 0.0121 0.1257 0.0060 0.0693
* Row count is limited to 100.